Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00520

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00500 and PGA1_c00510 are separated by 11 nucleotidesPGA1_c00510 and PGA1_c00520 are separated by 302 nucleotidesPGA1_c00520 and PGA1_c00530 are separated by 67 nucleotides PGA1_c00500: PGA1_c00500 - 50S ribosomal protein L31, at 55,187 to 55,408 _c00500 PGA1_c00510: PGA1_c00510 - 50S ribosomal protein L19, at 55,420 to 55,791 _c00510 PGA1_c00520: PGA1_c00520 - tRNA (guanine-N(1)-)-methyltransferase TrmD, at 56,094 to 56,894 _c00520 PGA1_c00530: PGA1_c00530 - Phosphotransferase enzyme family., at 56,962 to 57,990 _c00530 Position (kb) 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 56.042 kb on + strandat 56.047 kb on + strandat 56.067 kb on - strandat 56.120 kb on - strandat 56.120 kb on - strandat 56.123 kb on - strandat 56.895 kb on - strandat 56.944 kb on - strandat 56.944 kb on - strandat 56.944 kb on - strandat 56.944 kb on - strandat 56.974 kb on - strandat 56.979 kb on - strandat 56.988 kb on + strandat 57.010 kb on + strandat 57.010 kb on + strandat 57.018 kb on - strandat 57.018 kb on - strandat 57.018 kb on - strandat 57.018 kb on - strandat 57.020 kb on + strandat 57.058 kb on + strandat 57.065 kb on - strand, within PGA1_c00530at 57.102 kb on - strand, within PGA1_c00530at 57.108 kb on + strand, within PGA1_c00530at 57.115 kb on - strand, within PGA1_c00530at 57.116 kb on - strand, within PGA1_c00530at 57.128 kb on + strand, within PGA1_c00530at 57.202 kb on - strand, within PGA1_c00530at 57.204 kb on + strand, within PGA1_c00530at 57.212 kb on - strand, within PGA1_c00530at 57.252 kb on + strand, within PGA1_c00530at 57.252 kb on + strand, within PGA1_c00530at 57.289 kb on + strand, within PGA1_c00530at 57.289 kb on + strand, within PGA1_c00530at 57.289 kb on + strand, within PGA1_c00530at 57.289 kb on + strand, within PGA1_c00530at 57.299 kb on + strand, within PGA1_c00530at 57.317 kb on + strand, within PGA1_c00530at 57.330 kb on - strand, within PGA1_c00530at 57.331 kb on + strand, within PGA1_c00530at 57.335 kb on - strand, within PGA1_c00530at 57.341 kb on + strand, within PGA1_c00530at 57.351 kb on + strand, within PGA1_c00530at 57.351 kb on + strand, within PGA1_c00530at 57.361 kb on + strand, within PGA1_c00530at 57.376 kb on - strand, within PGA1_c00530at 57.388 kb on - strand, within PGA1_c00530at 57.423 kb on + strand, within PGA1_c00530at 57.423 kb on + strand, within PGA1_c00530at 57.423 kb on + strand, within PGA1_c00530at 57.426 kb on - strand, within PGA1_c00530at 57.428 kb on + strand, within PGA1_c00530at 57.428 kb on + strand, within PGA1_c00530at 57.431 kb on - strand, within PGA1_c00530at 57.456 kb on - strand, within PGA1_c00530at 57.459 kb on + strand, within PGA1_c00530at 57.460 kb on + strand, within PGA1_c00530at 57.467 kb on - strand, within PGA1_c00530at 57.467 kb on - strand, within PGA1_c00530at 57.480 kb on - strand, within PGA1_c00530at 57.492 kb on + strand, within PGA1_c00530at 57.514 kb on - strand, within PGA1_c00530at 57.515 kb on + strand, within PGA1_c00530at 57.540 kb on + strand, within PGA1_c00530at 57.540 kb on + strand, within PGA1_c00530at 57.540 kb on - strand, within PGA1_c00530at 57.542 kb on + strand, within PGA1_c00530at 57.561 kb on + strand, within PGA1_c00530at 57.561 kb on + strand, within PGA1_c00530at 57.586 kb on + strand, within PGA1_c00530at 57.605 kb on + strand, within PGA1_c00530at 57.613 kb on - strand, within PGA1_c00530at 57.613 kb on - strand, within PGA1_c00530at 57.640 kb on + strand, within PGA1_c00530at 57.640 kb on + strand, within PGA1_c00530at 57.640 kb on + strand, within PGA1_c00530at 57.640 kb on + strand, within PGA1_c00530at 57.648 kb on - strand, within PGA1_c00530at 57.664 kb on - strand, within PGA1_c00530at 57.737 kb on + strand, within PGA1_c00530at 57.737 kb on - strand, within PGA1_c00530at 57.745 kb on - strand, within PGA1_c00530at 57.745 kb on - strand, within PGA1_c00530at 57.745 kb on - strand, within PGA1_c00530at 57.806 kb on + strand, within PGA1_c00530at 57.816 kb on + strand, within PGA1_c00530at 57.816 kb on + strand, within PGA1_c00530at 57.824 kb on - strand, within PGA1_c00530at 57.824 kb on - strand, within PGA1_c00530at 57.885 kb on + strand, within PGA1_c00530at 57.887 kb on + strand, within PGA1_c00530at 57.887 kb on + strand, within PGA1_c00530at 57.890 kb on - strandat 57.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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56,042 + -2.9
56,047 + +0.3
56,067 - +0.9
56,120 - -2.1
56,120 - +0.5
56,123 - -0.6
56,895 - -1.3
56,944 - +0.9
56,944 - -0.1
56,944 - +0.4
56,944 - -1.1
56,974 - -1.9
56,979 - +1.3
56,988 + -0.1
57,010 + +0.5
57,010 + +0.3
57,018 - -0.1
57,018 - +0.9
57,018 - +0.5
57,018 - -2.1
57,020 + -0.5
57,058 + -0.4
57,065 - PGA1_c00530 0.10 -2.9
57,102 - PGA1_c00530 0.14 +0.4
57,108 + PGA1_c00530 0.14 -3.1
57,115 - PGA1_c00530 0.15 +0.1
57,116 - PGA1_c00530 0.15 -0.9
57,128 + PGA1_c00530 0.16 -2.1
57,202 - PGA1_c00530 0.23 -0.7
57,204 + PGA1_c00530 0.24 +1.3
57,212 - PGA1_c00530 0.24 +0.7
57,252 + PGA1_c00530 0.28 +0.3
57,252 + PGA1_c00530 0.28 +1.1
57,289 + PGA1_c00530 0.32 -0.6
57,289 + PGA1_c00530 0.32 +1.3
57,289 + PGA1_c00530 0.32 -0.5
57,289 + PGA1_c00530 0.32 -0.7
57,299 + PGA1_c00530 0.33 -0.5
57,317 + PGA1_c00530 0.34 -0.7
57,330 - PGA1_c00530 0.36 +0.3
57,331 + PGA1_c00530 0.36 -0.2
57,335 - PGA1_c00530 0.36 +0.9
57,341 + PGA1_c00530 0.37 -0.4
57,351 + PGA1_c00530 0.38 -2.1
57,351 + PGA1_c00530 0.38 +0.3
57,361 + PGA1_c00530 0.39 +0.1
57,376 - PGA1_c00530 0.40 -0.3
57,388 - PGA1_c00530 0.41 +0.4
57,423 + PGA1_c00530 0.45 -1.2
57,423 + PGA1_c00530 0.45 -0.5
57,423 + PGA1_c00530 0.45 -2.7
57,426 - PGA1_c00530 0.45 +1.0
57,428 + PGA1_c00530 0.45 -2.3
57,428 + PGA1_c00530 0.45 -0.4
57,431 - PGA1_c00530 0.46 -1.5
57,456 - PGA1_c00530 0.48 +0.5
57,459 + PGA1_c00530 0.48 -2.6
57,460 + PGA1_c00530 0.48 -1.1
57,467 - PGA1_c00530 0.49 -1.0
57,467 - PGA1_c00530 0.49 -0.6
57,480 - PGA1_c00530 0.50 +1.4
57,492 + PGA1_c00530 0.52 -1.2
57,514 - PGA1_c00530 0.54 -0.5
57,515 + PGA1_c00530 0.54 -0.3
57,540 + PGA1_c00530 0.56 +0.6
57,540 + PGA1_c00530 0.56 -1.2
57,540 - PGA1_c00530 0.56 -0.5
57,542 + PGA1_c00530 0.56 -0.1
57,561 + PGA1_c00530 0.58 -1.6
57,561 + PGA1_c00530 0.58 +0.6
57,586 + PGA1_c00530 0.61 -0.7
57,605 + PGA1_c00530 0.62 -0.3
57,613 - PGA1_c00530 0.63 +0.1
57,613 - PGA1_c00530 0.63 -0.6
57,640 + PGA1_c00530 0.66 -1.3
57,640 + PGA1_c00530 0.66 -0.1
57,640 + PGA1_c00530 0.66 -0.1
57,640 + PGA1_c00530 0.66 -1.2
57,648 - PGA1_c00530 0.67 -0.1
57,664 - PGA1_c00530 0.68 +2.2
57,737 + PGA1_c00530 0.75 -1.1
57,737 - PGA1_c00530 0.75 +0.3
57,745 - PGA1_c00530 0.76 -0.5
57,745 - PGA1_c00530 0.76 +0.4
57,745 - PGA1_c00530 0.76 -2.2
57,806 + PGA1_c00530 0.82 +0.4
57,816 + PGA1_c00530 0.83 +0.3
57,816 + PGA1_c00530 0.83 +1.1
57,824 - PGA1_c00530 0.84 -0.7
57,824 - PGA1_c00530 0.84 -1.6
57,885 + PGA1_c00530 0.90 +0.8
57,887 + PGA1_c00530 0.90 -0.2
57,887 + PGA1_c00530 0.90 -1.8
57,890 - -2.9
57,892 + -1.8

Or see this region's nucleotide sequence