Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g46

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g44 and HP15_p187g45 are separated by 3 nucleotidesHP15_p187g45 and HP15_p187g46 are separated by 11 nucleotidesHP15_p187g46 and HP15_p187g47 are separated by 103 nucleotides HP15_p187g44: HP15_p187g44 - polysaccharide biosynthesis/export protein, at 37,247 to 38,368 _p187g44 HP15_p187g45: HP15_p187g45 - protein-tyrosine phosphatase, low molecular weight, at 38,372 to 38,806 _p187g45 HP15_p187g46: HP15_p187g46 - exopolysaccharide tyrosine-protein kinase, at 38,818 to 41,028 _p187g46 HP15_p187g47: HP15_p187g47 - dTDP-glucose 4,6-dehydratase, at 41,132 to 42,205 _p187g47 Position (kb) 38 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2 3at 37.875 kb on + strand, within HP15_p187g44at 37.944 kb on - strand, within HP15_p187g44at 37.948 kb on + strand, within HP15_p187g44at 37.959 kb on - strand, within HP15_p187g44at 37.995 kb on - strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.071 kb on - strand, within HP15_p187g44at 38.072 kb on - strand, within HP15_p187g44at 38.074 kb on + strand, within HP15_p187g44at 38.085 kb on + strand, within HP15_p187g44at 38.093 kb on - strand, within HP15_p187g44at 38.130 kb on + strand, within HP15_p187g44at 38.138 kb on + strand, within HP15_p187g44at 38.181 kb on - strand, within HP15_p187g44at 38.202 kb on - strand, within HP15_p187g44at 38.260 kb on - strandat 38.327 kb on + strandat 38.332 kb on + strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.370 kb on - strandat 38.372 kb on - strandat 38.486 kb on - strand, within HP15_p187g45at 38.487 kb on - strand, within HP15_p187g45at 38.517 kb on + strand, within HP15_p187g45at 38.535 kb on - strand, within HP15_p187g45at 38.535 kb on - strand, within HP15_p187g45at 38.549 kb on - strand, within HP15_p187g45at 38.600 kb on + strand, within HP15_p187g45at 38.634 kb on + strand, within HP15_p187g45at 38.647 kb on + strand, within HP15_p187g45at 38.665 kb on - strand, within HP15_p187g45at 38.712 kb on + strand, within HP15_p187g45at 38.712 kb on + strand, within HP15_p187g45at 38.720 kb on - strand, within HP15_p187g45at 38.720 kb on - strand, within HP15_p187g45at 38.782 kb on + strandat 38.785 kb on - strandat 38.791 kb on + strandat 38.906 kb on - strandat 38.923 kb on - strandat 38.933 kb on + strandat 38.945 kb on + strandat 38.945 kb on - strandat 38.973 kb on + strandat 39.003 kb on + strandat 39.003 kb on + strandat 39.011 kb on - strandat 39.011 kb on - strandat 39.040 kb on + strand, within HP15_p187g46at 39.073 kb on + strand, within HP15_p187g46at 39.079 kb on - strand, within HP15_p187g46at 39.141 kb on - strand, within HP15_p187g46at 39.143 kb on + strand, within HP15_p187g46at 39.150 kb on + strand, within HP15_p187g46at 39.151 kb on - strand, within HP15_p187g46at 39.151 kb on - strand, within HP15_p187g46at 39.158 kb on - strand, within HP15_p187g46at 39.179 kb on + strand, within HP15_p187g46at 39.236 kb on + strand, within HP15_p187g46at 39.238 kb on + strand, within HP15_p187g46at 39.244 kb on - strand, within HP15_p187g46at 39.294 kb on + strand, within HP15_p187g46at 39.379 kb on + strand, within HP15_p187g46at 39.384 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.416 kb on + strand, within HP15_p187g46at 39.424 kb on - strand, within HP15_p187g46at 39.424 kb on - strand, within HP15_p187g46at 39.424 kb on - strand, within HP15_p187g46at 39.448 kb on + strand, within HP15_p187g46at 39.480 kb on + strand, within HP15_p187g46at 39.572 kb on + strand, within HP15_p187g46at 39.572 kb on + strand, within HP15_p187g46at 39.599 kb on + strand, within HP15_p187g46at 39.599 kb on - strand, within HP15_p187g46at 39.692 kb on + strand, within HP15_p187g46at 39.744 kb on - strand, within HP15_p187g46at 39.771 kb on + strand, within HP15_p187g46at 39.774 kb on - strand, within HP15_p187g46at 39.781 kb on - strand, within HP15_p187g46at 39.804 kb on + strand, within HP15_p187g46at 39.823 kb on - strand, within HP15_p187g46at 39.871 kb on - strand, within HP15_p187g46at 39.876 kb on - strand, within HP15_p187g46at 39.905 kb on - strand, within HP15_p187g46at 40.040 kb on + strand, within HP15_p187g46at 40.050 kb on + strand, within HP15_p187g46at 40.083 kb on + strand, within HP15_p187g46at 40.103 kb on - strand, within HP15_p187g46at 40.159 kb on - strand, within HP15_p187g46at 40.197 kb on - strand, within HP15_p187g46at 40.212 kb on - strand, within HP15_p187g46at 40.265 kb on - strand, within HP15_p187g46at 40.270 kb on - strand, within HP15_p187g46at 40.270 kb on - strand, within HP15_p187g46at 40.371 kb on - strand, within HP15_p187g46at 40.415 kb on - strand, within HP15_p187g46at 40.415 kb on - strand, within HP15_p187g46at 40.415 kb on - strand, within HP15_p187g46at 40.415 kb on - strand, within HP15_p187g46at 40.422 kb on - strand, within HP15_p187g46at 40.422 kb on - strand, within HP15_p187g46at 40.422 kb on - strand, within HP15_p187g46at 40.439 kb on - strand, within HP15_p187g46at 40.466 kb on + strand, within HP15_p187g46at 40.467 kb on + strand, within HP15_p187g46at 40.490 kb on + strand, within HP15_p187g46at 40.498 kb on - strand, within HP15_p187g46at 40.577 kb on + strand, within HP15_p187g46at 40.585 kb on + strand, within HP15_p187g46at 40.675 kb on + strand, within HP15_p187g46at 40.675 kb on + strand, within HP15_p187g46at 40.675 kb on + strand, within HP15_p187g46at 40.683 kb on - strand, within HP15_p187g46at 40.683 kb on - strand, within HP15_p187g46at 40.690 kb on + strand, within HP15_p187g46at 40.693 kb on - strand, within HP15_p187g46at 40.698 kb on - strand, within HP15_p187g46at 40.698 kb on - strand, within HP15_p187g46at 40.698 kb on - strand, within HP15_p187g46at 40.713 kb on - strand, within HP15_p187g46at 40.713 kb on - strand, within HP15_p187g46at 40.723 kb on - strand, within HP15_p187g46at 40.738 kb on + strand, within HP15_p187g46at 40.860 kb on - strandat 40.861 kb on - strandat 40.873 kb on + strandat 40.975 kb on + strandat 41.130 kb on + strandat 41.167 kb on - strandat 41.190 kb on + strandat 41.221 kb on - strandat 41.256 kb on - strand, within HP15_p187g47at 41.256 kb on - strand, within HP15_p187g47at 41.256 kb on - strand, within HP15_p187g47at 41.289 kb on + strand, within HP15_p187g47at 41.289 kb on + strand, within HP15_p187g47at 41.289 kb on + strand, within HP15_p187g47at 41.289 kb on - strand, within HP15_p187g47at 41.297 kb on - strand, within HP15_p187g47at 41.322 kb on - strand, within HP15_p187g47at 41.324 kb on - strand, within HP15_p187g47at 41.327 kb on + strand, within HP15_p187g47at 41.329 kb on - strand, within HP15_p187g47at 41.333 kb on + strand, within HP15_p187g47at 41.358 kb on - strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.360 kb on + strand, within HP15_p187g47at 41.366 kb on - strand, within HP15_p187g47at 41.368 kb on - strand, within HP15_p187g47at 41.375 kb on + strand, within HP15_p187g47at 41.375 kb on + strand, within HP15_p187g47at 41.392 kb on - strand, within HP15_p187g47at 41.405 kb on - strand, within HP15_p187g47at 41.440 kb on + strand, within HP15_p187g47at 41.442 kb on + strand, within HP15_p187g47at 41.442 kb on + strand, within HP15_p187g47at 41.448 kb on - strand, within HP15_p187g47at 41.448 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.450 kb on - strand, within HP15_p187g47at 41.460 kb on - strand, within HP15_p187g47at 41.473 kb on - strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.536 kb on + strand, within HP15_p187g47at 41.539 kb on - strand, within HP15_p187g47at 41.544 kb on - strand, within HP15_p187g47at 41.545 kb on - strand, within HP15_p187g47at 41.577 kb on + strand, within HP15_p187g47at 41.579 kb on + strand, within HP15_p187g47at 41.593 kb on - strand, within HP15_p187g47at 41.612 kb on + strand, within HP15_p187g47at 41.620 kb on - strand, within HP15_p187g47at 41.641 kb on + strand, within HP15_p187g47at 41.654 kb on - strand, within HP15_p187g47at 41.668 kb on - strand, within HP15_p187g47at 41.687 kb on - strand, within HP15_p187g47at 41.693 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.827 kb on + strand, within HP15_p187g47at 41.829 kb on - strand, within HP15_p187g47at 41.835 kb on - strand, within HP15_p187g47at 41.840 kb on - strand, within HP15_p187g47at 41.842 kb on - strand, within HP15_p187g47at 41.853 kb on - strand, within HP15_p187g47at 41.865 kb on - strand, within HP15_p187g47at 41.899 kb on - strand, within HP15_p187g47at 41.900 kb on - strand, within HP15_p187g47at 41.921 kb on - strand, within HP15_p187g47at 42.028 kb on + strand, within HP15_p187g47at 42.028 kb on + strand, within HP15_p187g47

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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37,875 + HP15_p187g44 0.56 +0.1
37,944 - HP15_p187g44 0.62 -0.4
37,948 + HP15_p187g44 0.62 +0.1
37,959 - HP15_p187g44 0.63 +0.3
37,995 - HP15_p187g44 0.67 +2.5
38,063 + HP15_p187g44 0.73 -0.8
38,063 + HP15_p187g44 0.73 -0.7
38,063 + HP15_p187g44 0.73 +0.8
38,071 - HP15_p187g44 0.73 +0.2
38,072 - HP15_p187g44 0.74 +1.1
38,074 + HP15_p187g44 0.74 -0.4
38,085 + HP15_p187g44 0.75 -1.0
38,093 - HP15_p187g44 0.75 +0.7
38,130 + HP15_p187g44 0.79 -0.8
38,138 + HP15_p187g44 0.79 -0.1
38,181 - HP15_p187g44 0.83 +1.8
38,202 - HP15_p187g44 0.85 +0.3
38,260 - -1.4
38,327 + -0.5
38,332 + -0.4
38,340 - -0.1
38,340 - -0.6
38,340 - -0.4
38,340 - -0.1
38,340 - -0.2
38,340 - -1.0
38,340 - +0.2
38,340 - -0.4
38,340 - +2.1
38,340 - +0.6
38,340 - -0.2
38,370 - -0.2
38,372 - -0.1
38,486 - HP15_p187g45 0.26 +3.1
38,487 - HP15_p187g45 0.26 +1.3
38,517 + HP15_p187g45 0.33 -0.7
38,535 - HP15_p187g45 0.37 +0.0
38,535 - HP15_p187g45 0.37 +0.4
38,549 - HP15_p187g45 0.41 -0.5
38,600 + HP15_p187g45 0.52 +0.4
38,634 + HP15_p187g45 0.60 -0.7
38,647 + HP15_p187g45 0.63 -0.9
38,665 - HP15_p187g45 0.67 +0.8
38,712 + HP15_p187g45 0.78 -1.8
38,712 + HP15_p187g45 0.78 -0.2
38,720 - HP15_p187g45 0.80 +0.1
38,720 - HP15_p187g45 0.80 -0.4
38,782 + -0.6
38,785 - -0.7
38,791 + +1.2
38,906 - -0.6
38,923 - -0.4
38,933 + +1.3
38,945 + +1.3
38,945 - -1.8
38,973 + +2.4
39,003 + +0.6
39,003 + -0.8
39,011 - -0.2
39,011 - +1.3
39,040 + HP15_p187g46 0.10 +0.9
39,073 + HP15_p187g46 0.12 +0.3
39,079 - HP15_p187g46 0.12 +1.0
39,141 - HP15_p187g46 0.15 -1.2
39,143 + HP15_p187g46 0.15 +1.2
39,150 + HP15_p187g46 0.15 +1.2
39,151 - HP15_p187g46 0.15 -1.0
39,151 - HP15_p187g46 0.15 +1.3
39,158 - HP15_p187g46 0.15 +0.5
39,179 + HP15_p187g46 0.16 +0.4
39,236 + HP15_p187g46 0.19 -0.9
39,238 + HP15_p187g46 0.19 +1.5
39,244 - HP15_p187g46 0.19 +0.1
39,294 + HP15_p187g46 0.22 +0.3
39,379 + HP15_p187g46 0.25 -1.0
39,384 + HP15_p187g46 0.26 -0.8
39,416 + HP15_p187g46 0.27 +0.4
39,416 + HP15_p187g46 0.27 +0.7
39,416 + HP15_p187g46 0.27 +0.3
39,416 + HP15_p187g46 0.27 +0.9
39,416 + HP15_p187g46 0.27 +0.4
39,416 + HP15_p187g46 0.27 -1.2
39,416 + HP15_p187g46 0.27 +1.1
39,416 + HP15_p187g46 0.27 -0.1
39,424 - HP15_p187g46 0.27 +0.9
39,424 - HP15_p187g46 0.27 +0.0
39,424 - HP15_p187g46 0.27 -0.1
39,448 + HP15_p187g46 0.28 -0.6
39,480 + HP15_p187g46 0.30 -0.8
39,572 + HP15_p187g46 0.34 -1.0
39,572 + HP15_p187g46 0.34 -0.9
39,599 + HP15_p187g46 0.35 +0.3
39,599 - HP15_p187g46 0.35 +1.3
39,692 + HP15_p187g46 0.40 +0.3
39,744 - HP15_p187g46 0.42 -0.0
39,771 + HP15_p187g46 0.43 -0.1
39,774 - HP15_p187g46 0.43 -0.1
39,781 - HP15_p187g46 0.44 +0.2
39,804 + HP15_p187g46 0.45 +0.6
39,823 - HP15_p187g46 0.45 +1.3
39,871 - HP15_p187g46 0.48 +1.0
39,876 - HP15_p187g46 0.48 +1.5
39,905 - HP15_p187g46 0.49 +0.5
40,040 + HP15_p187g46 0.55 +0.1
40,050 + HP15_p187g46 0.56 +1.0
40,083 + HP15_p187g46 0.57 +0.2
40,103 - HP15_p187g46 0.58 +0.5
40,159 - HP15_p187g46 0.61 -0.7
40,197 - HP15_p187g46 0.62 +1.5
40,212 - HP15_p187g46 0.63 +3.4
40,265 - HP15_p187g46 0.65 -0.7
40,270 - HP15_p187g46 0.66 +0.0
40,270 - HP15_p187g46 0.66 +0.2
40,371 - HP15_p187g46 0.70 -0.5
40,415 - HP15_p187g46 0.72 +0.0
40,415 - HP15_p187g46 0.72 +1.0
40,415 - HP15_p187g46 0.72 +2.5
40,415 - HP15_p187g46 0.72 -0.7
40,422 - HP15_p187g46 0.73 +0.7
40,422 - HP15_p187g46 0.73 -0.5
40,422 - HP15_p187g46 0.73 +0.1
40,439 - HP15_p187g46 0.73 +0.5
40,466 + HP15_p187g46 0.75 -1.3
40,467 + HP15_p187g46 0.75 +0.7
40,490 + HP15_p187g46 0.76 +0.7
40,498 - HP15_p187g46 0.76 +0.2
40,577 + HP15_p187g46 0.80 -1.0
40,585 + HP15_p187g46 0.80 +0.1
40,675 + HP15_p187g46 0.84 -0.3
40,675 + HP15_p187g46 0.84 -0.0
40,675 + HP15_p187g46 0.84 +1.1
40,683 - HP15_p187g46 0.84 -0.0
40,683 - HP15_p187g46 0.84 -0.5
40,690 + HP15_p187g46 0.85 +0.5
40,693 - HP15_p187g46 0.85 +1.0
40,698 - HP15_p187g46 0.85 +0.5
40,698 - HP15_p187g46 0.85 -1.2
40,698 - HP15_p187g46 0.85 +0.9
40,713 - HP15_p187g46 0.86 +0.2
40,713 - HP15_p187g46 0.86 +0.1
40,723 - HP15_p187g46 0.86 -0.4
40,738 + HP15_p187g46 0.87 -1.3
40,860 - -0.9
40,861 - +0.5
40,873 + -0.2
40,975 + +0.7
41,130 + -0.0
41,167 - -0.0
41,190 + -1.7
41,221 - +1.2
41,256 - HP15_p187g47 0.12 -0.8
41,256 - HP15_p187g47 0.12 +0.4
41,256 - HP15_p187g47 0.12 -0.5
41,289 + HP15_p187g47 0.15 +0.4
41,289 + HP15_p187g47 0.15 -0.7
41,289 + HP15_p187g47 0.15 +0.7
41,289 - HP15_p187g47 0.15 +0.1
41,297 - HP15_p187g47 0.15 +0.1
41,322 - HP15_p187g47 0.18 -0.5
41,324 - HP15_p187g47 0.18 -0.5
41,327 + HP15_p187g47 0.18 -0.5
41,329 - HP15_p187g47 0.18 +2.1
41,333 + HP15_p187g47 0.19 -0.8
41,358 - HP15_p187g47 0.21 +0.4
41,360 + HP15_p187g47 0.21 -1.4
41,360 + HP15_p187g47 0.21 +2.5
41,360 + HP15_p187g47 0.21 +0.6
41,360 + HP15_p187g47 0.21 -1.1
41,360 + HP15_p187g47 0.21 +0.1
41,360 + HP15_p187g47 0.21 -0.2
41,366 - HP15_p187g47 0.22 -0.6
41,368 - HP15_p187g47 0.22 +0.5
41,375 + HP15_p187g47 0.23 +0.4
41,375 + HP15_p187g47 0.23 +3.1
41,392 - HP15_p187g47 0.24 -0.5
41,405 - HP15_p187g47 0.25 -0.1
41,440 + HP15_p187g47 0.29 +0.5
41,442 + HP15_p187g47 0.29 +1.0
41,442 + HP15_p187g47 0.29 +1.2
41,448 - HP15_p187g47 0.29 +0.8
41,448 - HP15_p187g47 0.29 -0.1
41,450 - HP15_p187g47 0.30 +1.8
41,450 - HP15_p187g47 0.30 +0.4
41,450 - HP15_p187g47 0.30 +0.8
41,460 - HP15_p187g47 0.31 +0.4
41,473 - HP15_p187g47 0.32 -0.1
41,536 + HP15_p187g47 0.38 +0.8
41,536 + HP15_p187g47 0.38 +0.6
41,536 + HP15_p187g47 0.38 +0.2
41,539 - HP15_p187g47 0.38 +2.8
41,544 - HP15_p187g47 0.38 +0.3
41,545 - HP15_p187g47 0.38 -1.0
41,577 + HP15_p187g47 0.41 -0.2
41,579 + HP15_p187g47 0.42 -0.3
41,593 - HP15_p187g47 0.43 +0.2
41,612 + HP15_p187g47 0.45 -0.0
41,620 - HP15_p187g47 0.45 -0.3
41,641 + HP15_p187g47 0.47 -1.6
41,654 - HP15_p187g47 0.49 -0.5
41,668 - HP15_p187g47 0.50 +0.6
41,687 - HP15_p187g47 0.52 +1.2
41,693 + HP15_p187g47 0.52 +0.1
41,827 + HP15_p187g47 0.65 -0.3
41,827 + HP15_p187g47 0.65 +1.3
41,827 + HP15_p187g47 0.65 -0.1
41,829 - HP15_p187g47 0.65 -0.6
41,835 - HP15_p187g47 0.65 +0.0
41,840 - HP15_p187g47 0.66 -0.6
41,842 - HP15_p187g47 0.66 -0.0
41,853 - HP15_p187g47 0.67 +0.5
41,865 - HP15_p187g47 0.68 +0.1
41,899 - HP15_p187g47 0.71 +0.3
41,900 - HP15_p187g47 0.72 -0.4
41,921 - HP15_p187g47 0.73 +0.2
42,028 + HP15_p187g47 0.83 +0.3
42,028 + HP15_p187g47 0.83 -1.0

Or see this region's nucleotide sequence