Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29980

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29970 and PGA1_c29980 are separated by 37 nucleotidesPGA1_c29980 and PGA1_c29990 are separated by 106 nucleotides PGA1_c29970: PGA1_c29970 - coproporphyrinogen 3 oxidase, aerobic, at 3,134,059 to 3,134,952 _c29970 PGA1_c29980: PGA1_c29980 - putative short chain dehydrogenase, at 3,134,990 to 3,135,793 _c29980 PGA1_c29990: PGA1_c29990 - methyltransferase, at 3,135,900 to 3,136,892 _c29990 Position (kb) 3134 3135 3136Strain fitness (log2 ratio) -2 -1 0 1 2at 3134.034 kb on - strandat 3134.041 kb on + strandat 3134.049 kb on - strandat 3134.945 kb on + strandat 3134.945 kb on + strandat 3134.945 kb on + strandat 3134.945 kb on + strandat 3134.953 kb on - strandat 3134.953 kb on - strandat 3135.012 kb on - strandat 3135.012 kb on - strandat 3135.914 kb on + strandat 3135.963 kb on + strandat 3135.971 kb on - strandat 3136.018 kb on - strand, within PGA1_c29990at 3136.064 kb on - strand, within PGA1_c29990at 3136.071 kb on + strand, within PGA1_c29990at 3136.110 kb on + strand, within PGA1_c29990at 3136.121 kb on - strand, within PGA1_c29990at 3136.146 kb on - strand, within PGA1_c29990at 3136.190 kb on - strand, within PGA1_c29990at 3136.285 kb on + strand, within PGA1_c29990at 3136.288 kb on + strand, within PGA1_c29990at 3136.310 kb on - strand, within PGA1_c29990at 3136.310 kb on - strand, within PGA1_c29990at 3136.414 kb on + strand, within PGA1_c29990at 3136.449 kb on - strand, within PGA1_c29990at 3136.449 kb on - strand, within PGA1_c29990at 3136.449 kb on - strand, within PGA1_c29990at 3136.464 kb on - strand, within PGA1_c29990at 3136.471 kb on - strand, within PGA1_c29990at 3136.471 kb on - strand, within PGA1_c29990at 3136.505 kb on + strand, within PGA1_c29990at 3136.505 kb on - strand, within PGA1_c29990at 3136.600 kb on - strand, within PGA1_c29990at 3136.603 kb on + strand, within PGA1_c29990at 3136.608 kb on + strand, within PGA1_c29990at 3136.662 kb on + strand, within PGA1_c29990at 3136.738 kb on + strand, within PGA1_c29990at 3136.764 kb on + strand, within PGA1_c29990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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3,134,034 - -0.6
3,134,041 + -0.3
3,134,049 - +0.2
3,134,945 + -0.2
3,134,945 + +0.6
3,134,945 + +0.4
3,134,945 + +1.4
3,134,953 - +0.8
3,134,953 - -1.8
3,135,012 - -0.1
3,135,012 - +2.4
3,135,914 + +1.4
3,135,963 + +0.2
3,135,971 - -0.0
3,136,018 - PGA1_c29990 0.12 -0.6
3,136,064 - PGA1_c29990 0.17 -0.0
3,136,071 + PGA1_c29990 0.17 -0.0
3,136,110 + PGA1_c29990 0.21 -0.2
3,136,121 - PGA1_c29990 0.22 +0.3
3,136,146 - PGA1_c29990 0.25 +0.6
3,136,190 - PGA1_c29990 0.29 -2.6
3,136,285 + PGA1_c29990 0.39 +1.2
3,136,288 + PGA1_c29990 0.39 -1.7
3,136,310 - PGA1_c29990 0.41 +0.6
3,136,310 - PGA1_c29990 0.41 -0.3
3,136,414 + PGA1_c29990 0.52 +1.2
3,136,449 - PGA1_c29990 0.55 +1.8
3,136,449 - PGA1_c29990 0.55 -0.8
3,136,449 - PGA1_c29990 0.55 +0.9
3,136,464 - PGA1_c29990 0.57 +1.1
3,136,471 - PGA1_c29990 0.58 +0.4
3,136,471 - PGA1_c29990 0.58 +1.1
3,136,505 + PGA1_c29990 0.61 +0.3
3,136,505 - PGA1_c29990 0.61 +0.8
3,136,600 - PGA1_c29990 0.70 -0.8
3,136,603 + PGA1_c29990 0.71 -0.0
3,136,608 + PGA1_c29990 0.71 -0.2
3,136,662 + PGA1_c29990 0.77 +1.7
3,136,738 + PGA1_c29990 0.84 -1.4
3,136,764 + PGA1_c29990 0.87 +0.9

Or see this region's nucleotide sequence