Strain Fitness in Marinobacter adhaerens HP15 around HP15_2539

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2538 and HP15_2540 are separated by 143 nucleotidesHP15_2540 and HP15_2539 overlap by 21 nucleotidesHP15_2539 and HP15_2541 are separated by 22 nucleotidesHP15_2541 and HP15_2542 are separated by 155 nucleotides HP15_2538: HP15_2538 - acetyl/propionyl-CoA carboxylase beta subunit, at 2,682,796 to 2,684,412 _2538 HP15_2540: HP15_2540 - hypothetical protein, at 2,684,556 to 2,684,810 _2540 HP15_2539: HP15_2539 - acyl-CoA dehydrogenase domain protein, at 2,684,790 to 2,685,950 _2539 HP15_2541: HP15_2541 - enoyl-CoA hydratase/isomerase family protein, at 2,685,973 to 2,686,794 _2541 HP15_2542: HP15_2542 - methylcrotonoyl-coenzyme A carboxylase 1 (alpha), at 2,686,950 to 2,688,920 _2542 Position (kb) 2684 2685 2686Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2683.862 kb on - strand, within HP15_2538at 2683.928 kb on + strand, within HP15_2538at 2683.959 kb on - strand, within HP15_2538at 2684.221 kb on - strand, within HP15_2538at 2684.222 kb on + strand, within HP15_2538at 2684.227 kb on + strand, within HP15_2538at 2684.271 kb on + strandat 2684.279 kb on - strandat 2684.537 kb on + strandat 2684.810 kb on - strandat 2684.978 kb on + strand, within HP15_2539at 2684.986 kb on - strand, within HP15_2539at 2685.067 kb on + strand, within HP15_2539at 2685.244 kb on + strand, within HP15_2539at 2685.389 kb on - strand, within HP15_2539at 2685.455 kb on - strand, within HP15_2539at 2685.518 kb on + strand, within HP15_2539at 2685.526 kb on - strand, within HP15_2539at 2685.526 kb on - strand, within HP15_2539at 2685.720 kb on + strand, within HP15_2539at 2685.720 kb on + strand, within HP15_2539at 2685.797 kb on + strand, within HP15_2539at 2685.872 kb on - strandat 2685.917 kb on + strandat 2685.967 kb on - strandat 2685.978 kb on - strandat 2686.099 kb on + strand, within HP15_2541at 2686.164 kb on + strand, within HP15_2541at 2686.164 kb on + strand, within HP15_2541at 2686.224 kb on + strand, within HP15_2541at 2686.251 kb on + strand, within HP15_2541at 2686.281 kb on + strand, within HP15_2541at 2686.300 kb on - strand, within HP15_2541at 2686.327 kb on + strand, within HP15_2541at 2686.335 kb on - strand, within HP15_2541at 2686.335 kb on - strand, within HP15_2541at 2686.491 kb on + strand, within HP15_2541at 2686.650 kb on - strand, within HP15_2541at 2686.652 kb on + strand, within HP15_2541at 2686.683 kb on + strand, within HP15_2541at 2686.749 kb on - strandat 2686.904 kb on + strandat 2686.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,683,862 - HP15_2538 0.66 +0.1
2,683,928 + HP15_2538 0.70 +0.4
2,683,959 - HP15_2538 0.72 +1.0
2,684,221 - HP15_2538 0.88 -0.5
2,684,222 + HP15_2538 0.88 -0.3
2,684,227 + HP15_2538 0.88 +0.7
2,684,271 + +0.1
2,684,279 - +0.3
2,684,537 + -0.7
2,684,810 - +0.1
2,684,978 + HP15_2539 0.16 +1.3
2,684,986 - HP15_2539 0.17 +0.6
2,685,067 + HP15_2539 0.24 +1.7
2,685,244 + HP15_2539 0.39 -1.1
2,685,389 - HP15_2539 0.52 -1.3
2,685,455 - HP15_2539 0.57 -0.6
2,685,518 + HP15_2539 0.63 -0.4
2,685,526 - HP15_2539 0.63 +0.8
2,685,526 - HP15_2539 0.63 +1.1
2,685,720 + HP15_2539 0.80 -1.9
2,685,720 + HP15_2539 0.80 -0.4
2,685,797 + HP15_2539 0.87 -0.6
2,685,872 - +2.9
2,685,917 + +0.1
2,685,967 - -0.1
2,685,978 - +1.0
2,686,099 + HP15_2541 0.15 -0.6
2,686,164 + HP15_2541 0.23 +1.5
2,686,164 + HP15_2541 0.23 +1.1
2,686,224 + HP15_2541 0.31 +0.1
2,686,251 + HP15_2541 0.34 -0.5
2,686,281 + HP15_2541 0.37 +1.1
2,686,300 - HP15_2541 0.40 -0.0
2,686,327 + HP15_2541 0.43 -0.5
2,686,335 - HP15_2541 0.44 -0.2
2,686,335 - HP15_2541 0.44 -0.2
2,686,491 + HP15_2541 0.63 +1.0
2,686,650 - HP15_2541 0.82 -0.0
2,686,652 + HP15_2541 0.83 -0.1
2,686,683 + HP15_2541 0.86 +1.3
2,686,749 - -0.3
2,686,904 + +0.3
2,686,912 - -0.3

Or see this region's nucleotide sequence