Strain Fitness in Marinobacter adhaerens HP15 around HP15_1874

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1873 and HP15_1874 are separated by 6 nucleotidesHP15_1874 and HP15_1875 are separated by 412 nucleotides HP15_1873: HP15_1873 - TPR repeat protein, at 1,978,672 to 1,980,078 _1873 HP15_1874: HP15_1874 - conserved hypothetical protein, at 1,980,085 to 1,980,567 _1874 HP15_1875: HP15_1875 - conserved hypothetical protein, at 1,980,980 to 1,982,119 _1875 Position (kb) 1980 1981Strain fitness (log2 ratio) -2 -1 0 1at 1979.413 kb on + strand, within HP15_1873at 1979.417 kb on + strand, within HP15_1873at 1979.492 kb on - strand, within HP15_1873at 1979.492 kb on - strand, within HP15_1873at 1979.585 kb on - strand, within HP15_1873at 1979.824 kb on - strand, within HP15_1873at 1979.829 kb on - strand, within HP15_1873at 1979.925 kb on + strand, within HP15_1873at 1980.189 kb on - strand, within HP15_1874at 1980.434 kb on + strand, within HP15_1874at 1980.453 kb on + strand, within HP15_1874at 1980.564 kb on + strandat 1980.599 kb on - strandat 1980.629 kb on + strandat 1980.630 kb on + strandat 1980.703 kb on - strandat 1980.703 kb on - strandat 1980.957 kb on + strandat 1981.030 kb on + strandat 1981.140 kb on - strand, within HP15_1875at 1981.423 kb on + strand, within HP15_1875at 1981.467 kb on + strand, within HP15_1875at 1981.475 kb on - strand, within HP15_1875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,979,413 + HP15_1873 0.53 -0.7
1,979,417 + HP15_1873 0.53 +0.4
1,979,492 - HP15_1873 0.58 -0.3
1,979,492 - HP15_1873 0.58 -1.4
1,979,585 - HP15_1873 0.65 -0.9
1,979,824 - HP15_1873 0.82 -0.0
1,979,829 - HP15_1873 0.82 -0.3
1,979,925 + HP15_1873 0.89 +0.2
1,980,189 - HP15_1874 0.22 -2.2
1,980,434 + HP15_1874 0.72 -0.3
1,980,453 + HP15_1874 0.76 -1.0
1,980,564 + +1.0
1,980,599 - +0.6
1,980,629 + +0.6
1,980,630 + -0.2
1,980,703 - -0.2
1,980,703 - +0.0
1,980,957 + +0.2
1,981,030 + -0.8
1,981,140 - HP15_1875 0.14 +0.5
1,981,423 + HP15_1875 0.39 +1.0
1,981,467 + HP15_1875 0.43 +0.2
1,981,475 - HP15_1875 0.43 +0.2

Or see this region's nucleotide sequence