Strain Fitness in Marinobacter adhaerens HP15 around HP15_1840

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1839 and HP15_1840 are separated by 88 nucleotidesHP15_1840 and HP15_1841 are separated by 5 nucleotidesHP15_1841 and HP15_1842 overlap by 8 nucleotides HP15_1839: HP15_1839 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 1,938,596 to 1,939,498 _1839 HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801 _1840 HP15_1841: HP15_1841 - conserved hypothetical protein, secreted, at 1,940,807 to 1,941,721 _1841 HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664 _1842 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -1 0 1 2at 1939.136 kb on - strand, within HP15_1839at 1939.256 kb on - strand, within HP15_1839at 1939.299 kb on - strand, within HP15_1839at 1939.611 kb on + strandat 1939.619 kb on - strandat 1939.753 kb on + strand, within HP15_1840at 1939.753 kb on + strand, within HP15_1840at 1939.753 kb on + strand, within HP15_1840at 1939.784 kb on - strand, within HP15_1840at 1939.908 kb on + strand, within HP15_1840at 1940.031 kb on - strand, within HP15_1840at 1940.060 kb on + strand, within HP15_1840at 1940.173 kb on + strand, within HP15_1840at 1940.186 kb on - strand, within HP15_1840at 1940.260 kb on + strand, within HP15_1840at 1940.456 kb on + strand, within HP15_1840at 1940.478 kb on - strand, within HP15_1840at 1940.525 kb on - strand, within HP15_1840at 1940.598 kb on + strand, within HP15_1840at 1940.612 kb on - strand, within HP15_1840at 1940.612 kb on - strand, within HP15_1840at 1940.636 kb on - strand, within HP15_1840at 1940.636 kb on - strand, within HP15_1840at 1940.663 kb on - strand, within HP15_1840at 1940.786 kb on + strandat 1940.916 kb on + strand, within HP15_1841at 1941.041 kb on + strand, within HP15_1841at 1941.099 kb on - strand, within HP15_1841at 1941.265 kb on + strand, within HP15_1841at 1941.273 kb on - strand, within HP15_1841at 1941.500 kb on + strand, within HP15_1841at 1941.551 kb on - strand, within HP15_1841at 1941.551 kb on - strand, within HP15_1841at 1941.572 kb on - strand, within HP15_1841at 1941.618 kb on + strand, within HP15_1841at 1941.618 kb on + strand, within HP15_1841at 1941.643 kb on - strandat 1941.653 kb on - strandat 1941.671 kb on + strandat 1941.695 kb on - strandat 1941.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,939,136 - HP15_1839 0.60 -0.0
1,939,256 - HP15_1839 0.73 -0.5
1,939,299 - HP15_1839 0.78 -0.6
1,939,611 + +0.5
1,939,619 - -1.2
1,939,753 + HP15_1840 0.14 -0.5
1,939,753 + HP15_1840 0.14 +0.8
1,939,753 + HP15_1840 0.14 +0.6
1,939,784 - HP15_1840 0.16 -0.2
1,939,908 + HP15_1840 0.26 +2.0
1,940,031 - HP15_1840 0.37 -0.1
1,940,060 + HP15_1840 0.39 -0.3
1,940,173 + HP15_1840 0.48 +0.4
1,940,186 - HP15_1840 0.49 -0.2
1,940,260 + HP15_1840 0.55 +0.5
1,940,456 + HP15_1840 0.72 +1.4
1,940,478 - HP15_1840 0.73 +0.5
1,940,525 - HP15_1840 0.77 -0.4
1,940,598 + HP15_1840 0.83 -0.6
1,940,612 - HP15_1840 0.84 +1.1
1,940,612 - HP15_1840 0.84 +1.4
1,940,636 - HP15_1840 0.86 -0.9
1,940,636 - HP15_1840 0.86 -0.5
1,940,663 - HP15_1840 0.89 -0.6
1,940,786 + +0.2
1,940,916 + HP15_1841 0.12 +0.7
1,941,041 + HP15_1841 0.26 +1.1
1,941,099 - HP15_1841 0.32 +0.7
1,941,265 + HP15_1841 0.50 -0.4
1,941,273 - HP15_1841 0.51 +0.7
1,941,500 + HP15_1841 0.76 -1.3
1,941,551 - HP15_1841 0.81 +0.8
1,941,551 - HP15_1841 0.81 -1.0
1,941,572 - HP15_1841 0.84 -1.0
1,941,618 + HP15_1841 0.89 -1.0
1,941,618 + HP15_1841 0.89 +0.1
1,941,643 - -0.0
1,941,653 - +0.2
1,941,671 + -0.5
1,941,695 - +0.4
1,941,799 + -0.6

Or see this region's nucleotide sequence