Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19070 and PGA1_c19080 are separated by 165 nucleotides PGA1_c19080 and PGA1_c19090 are separated by 112 nucleotides PGA1_c19090 and PGA1_c19100 overlap by 1 nucleotides PGA1_c19100 and PGA1_c19110 are separated by 141 nucleotides
PGA1_c19070: PGA1_c19070 - LysM domain., at 1,981,168 to 1,982,955
_c19070
PGA1_c19080: PGA1_c19080 - TIGR00730 family protein, at 1,983,121 to 1,983,663
_c19080
PGA1_c19090: PGA1_c19090 - Protein required for attachment to host cells, at 1,983,776 to 1,984,228
_c19090
PGA1_c19100: PGA1_c19100 - hypothetical protein, at 1,984,228 to 1,984,428
_c19100
PGA1_c19110: PGA1_c19110 - superoxide dismutase SodB, at 1,984,570 to 1,985,169
_c19110
Position (kb) 1983
1984 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1982.186 kb on + strand, within PGA1_c19070 at 1982.243 kb on + strand, within PGA1_c19070 at 1982.243 kb on + strand, within PGA1_c19070 at 1982.286 kb on - strand, within PGA1_c19070 at 1982.287 kb on - strand, within PGA1_c19070 at 1982.356 kb on - strand, within PGA1_c19070 at 1982.364 kb on - strand, within PGA1_c19070 at 1982.371 kb on - strand, within PGA1_c19070 at 1982.418 kb on - strand, within PGA1_c19070 at 1982.420 kb on + strand, within PGA1_c19070 at 1982.430 kb on + strand, within PGA1_c19070 at 1982.462 kb on - strand, within PGA1_c19070 at 1982.551 kb on - strand, within PGA1_c19070 at 1982.703 kb on - strand, within PGA1_c19070 at 1982.719 kb on + strand, within PGA1_c19070 at 1982.886 kb on - strand at 1982.941 kb on - strand at 1983.014 kb on + strand at 1983.058 kb on - strand at 1983.242 kb on - strand, within PGA1_c19080 at 1983.243 kb on + strand, within PGA1_c19080 at 1983.250 kb on - strand, within PGA1_c19080 at 1983.296 kb on - strand, within PGA1_c19080 at 1983.299 kb on + strand, within PGA1_c19080 at 1983.313 kb on - strand, within PGA1_c19080 at 1983.373 kb on - strand, within PGA1_c19080 at 1983.411 kb on + strand, within PGA1_c19080 at 1983.433 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.557 kb on - strand, within PGA1_c19080 at 1983.719 kb on + strand at 1983.730 kb on - strand at 1983.773 kb on - strand at 1983.871 kb on - strand, within PGA1_c19090 at 1983.939 kb on + strand, within PGA1_c19090 at 1984.032 kb on - strand, within PGA1_c19090 at 1984.032 kb on - strand, within PGA1_c19090 at 1984.177 kb on + strand, within PGA1_c19090 at 1984.206 kb on - strand at 1984.206 kb on - strand at 1984.206 kb on - strand at 1984.279 kb on - strand, within PGA1_c19100 at 1984.404 kb on + strand, within PGA1_c19100 at 1984.442 kb on + strand at 1984.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 1,982,186 + PGA1_c19070 0.57 -0.3 1,982,243 + PGA1_c19070 0.60 -0.5 1,982,243 + PGA1_c19070 0.60 -0.3 1,982,286 - PGA1_c19070 0.63 -0.0 1,982,287 - PGA1_c19070 0.63 -1.1 1,982,356 - PGA1_c19070 0.66 +0.2 1,982,364 - PGA1_c19070 0.67 +0.5 1,982,371 - PGA1_c19070 0.67 -0.5 1,982,418 - PGA1_c19070 0.70 -0.7 1,982,420 + PGA1_c19070 0.70 -0.9 1,982,430 + PGA1_c19070 0.71 -0.4 1,982,462 - PGA1_c19070 0.72 +2.1 1,982,551 - PGA1_c19070 0.77 -0.9 1,982,703 - PGA1_c19070 0.86 -0.7 1,982,719 + PGA1_c19070 0.87 -1.6 1,982,886 - -0.7 1,982,941 - +2.4 1,983,014 + -0.8 1,983,058 - -1.6 1,983,242 - PGA1_c19080 0.22 -1.8 1,983,243 + PGA1_c19080 0.22 -2.1 1,983,250 - PGA1_c19080 0.24 -1.1 1,983,296 - PGA1_c19080 0.32 +0.1 1,983,299 + PGA1_c19080 0.33 -0.6 1,983,313 - PGA1_c19080 0.35 -0.1 1,983,373 - PGA1_c19080 0.46 -0.5 1,983,411 + PGA1_c19080 0.53 +0.4 1,983,433 + PGA1_c19080 0.57 -1.5 1,983,491 + PGA1_c19080 0.68 +0.6 1,983,491 + PGA1_c19080 0.68 -1.9 1,983,491 + PGA1_c19080 0.68 +1.1 1,983,557 - PGA1_c19080 0.80 +0.3 1,983,719 + -1.2 1,983,730 - +0.3 1,983,773 - -1.2 1,983,871 - PGA1_c19090 0.21 +1.0 1,983,939 + PGA1_c19090 0.36 -0.4 1,984,032 - PGA1_c19090 0.57 +1.1 1,984,032 - PGA1_c19090 0.57 +1.5 1,984,177 + PGA1_c19090 0.89 +0.6 1,984,206 - -2.6 1,984,206 - +0.9 1,984,206 - -0.4 1,984,279 - PGA1_c19100 0.25 -1.1 1,984,404 + PGA1_c19100 0.88 -0.9 1,984,442 + -2.1 1,984,467 + -1.3
Or see this region's nucleotide sequence