Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18350

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18330 and PGA1_c18340 overlap by 1 nucleotidesPGA1_c18340 and PGA1_c18350 are separated by 225 nucleotidesPGA1_c18350 and PGA1_c18360 overlap by 4 nucleotidesPGA1_c18360 and PGA1_c18370 are separated by 3 nucleotides PGA1_c18330: PGA1_c18330 - baseplate assembly protein J, at 1,915,049 to 1,915,948 _c18330 PGA1_c18340: PGA1_c18340 - putative baseplate assembly protein W, at 1,915,948 to 1,916,400 _c18340 PGA1_c18350: PGA1_c18350 - putative baseplate assembly protein V, at 1,916,626 to 1,917,051 _c18350 PGA1_c18360: PGA1_c18360 - hypothetical protein, at 1,917,048 to 1,917,581 _c18360 PGA1_c18370: PGA1_c18370 - hypothetical protein, at 1,917,585 to 1,918,136 _c18370 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1915.658 kb on + strand, within PGA1_c18330at 1915.666 kb on - strand, within PGA1_c18330at 1915.834 kb on - strand, within PGA1_c18330at 1915.895 kb on - strandat 1915.920 kb on + strandat 1915.930 kb on + strandat 1915.944 kb on + strandat 1915.956 kb on + strandat 1915.956 kb on + strandat 1915.964 kb on - strandat 1915.964 kb on - strandat 1915.964 kb on - strandat 1916.091 kb on + strand, within PGA1_c18340at 1916.091 kb on + strand, within PGA1_c18340at 1916.206 kb on + strand, within PGA1_c18340at 1916.279 kb on + strand, within PGA1_c18340at 1916.279 kb on + strand, within PGA1_c18340at 1916.298 kb on + strand, within PGA1_c18340at 1916.321 kb on - strand, within PGA1_c18340at 1916.402 kb on + strandat 1916.449 kb on + strandat 1916.451 kb on - strandat 1916.457 kb on - strandat 1916.457 kb on - strandat 1916.468 kb on + strandat 1916.512 kb on + strandat 1916.512 kb on + strandat 1916.520 kb on - strandat 1916.520 kb on - strandat 1916.520 kb on - strandat 1916.520 kb on - strandat 1916.629 kb on + strandat 1916.637 kb on - strandat 1916.659 kb on + strandat 1916.674 kb on + strand, within PGA1_c18350at 1916.762 kb on + strand, within PGA1_c18350at 1916.763 kb on - strand, within PGA1_c18350at 1916.777 kb on + strand, within PGA1_c18350at 1916.777 kb on + strand, within PGA1_c18350at 1916.783 kb on + strand, within PGA1_c18350at 1916.783 kb on + strand, within PGA1_c18350at 1916.791 kb on - strand, within PGA1_c18350at 1916.823 kb on + strand, within PGA1_c18350at 1916.859 kb on - strand, within PGA1_c18350at 1916.973 kb on - strand, within PGA1_c18350at 1916.985 kb on - strand, within PGA1_c18350at 1917.003 kb on + strand, within PGA1_c18350at 1917.012 kb on - strandat 1917.036 kb on + strandat 1917.057 kb on + strandat 1917.072 kb on + strandat 1917.112 kb on - strand, within PGA1_c18360at 1917.157 kb on - strand, within PGA1_c18360at 1917.187 kb on - strand, within PGA1_c18360at 1917.193 kb on + strand, within PGA1_c18360at 1917.193 kb on + strand, within PGA1_c18360at 1917.193 kb on + strand, within PGA1_c18360at 1917.201 kb on - strand, within PGA1_c18360at 1917.239 kb on + strand, within PGA1_c18360at 1917.247 kb on - strand, within PGA1_c18360at 1917.274 kb on + strand, within PGA1_c18360at 1917.299 kb on + strand, within PGA1_c18360at 1917.300 kb on + strand, within PGA1_c18360at 1917.308 kb on - strand, within PGA1_c18360at 1917.308 kb on - strand, within PGA1_c18360at 1917.396 kb on - strand, within PGA1_c18360at 1917.398 kb on + strand, within PGA1_c18360at 1917.425 kb on - strand, within PGA1_c18360at 1917.484 kb on + strand, within PGA1_c18360at 1917.484 kb on + strand, within PGA1_c18360at 1917.492 kb on + strand, within PGA1_c18360at 1917.492 kb on - strand, within PGA1_c18360at 1917.500 kb on - strand, within PGA1_c18360at 1917.500 kb on - strand, within PGA1_c18360at 1917.507 kb on - strand, within PGA1_c18360at 1917.511 kb on + strand, within PGA1_c18360at 1917.519 kb on - strand, within PGA1_c18360at 1917.582 kb on + strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.623 kb on - strandat 1917.687 kb on + strand, within PGA1_c18370at 1917.731 kb on + strand, within PGA1_c18370at 1917.736 kb on + strand, within PGA1_c18370at 1917.739 kb on - strand, within PGA1_c18370at 1917.751 kb on - strand, within PGA1_c18370at 1917.751 kb on - strand, within PGA1_c18370at 1917.777 kb on + strand, within PGA1_c18370at 1917.783 kb on + strand, within PGA1_c18370at 1917.807 kb on + strand, within PGA1_c18370at 1917.810 kb on - strand, within PGA1_c18370at 1917.830 kb on - strand, within PGA1_c18370at 1917.926 kb on - strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1918.020 kb on + strand, within PGA1_c18370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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1,915,658 + PGA1_c18330 0.68 +0.7
1,915,666 - PGA1_c18330 0.69 -2.5
1,915,834 - PGA1_c18330 0.87 -0.1
1,915,895 - -0.1
1,915,920 + -0.8
1,915,930 + -0.1
1,915,944 + +0.4
1,915,956 + +2.2
1,915,956 + -1.5
1,915,964 - +0.7
1,915,964 - +0.5
1,915,964 - +0.1
1,916,091 + PGA1_c18340 0.32 -1.5
1,916,091 + PGA1_c18340 0.32 +0.4
1,916,206 + PGA1_c18340 0.57 +1.1
1,916,279 + PGA1_c18340 0.73 +1.0
1,916,279 + PGA1_c18340 0.73 +1.0
1,916,298 + PGA1_c18340 0.77 -0.2
1,916,321 - PGA1_c18340 0.82 +1.6
1,916,402 + -0.2
1,916,449 + -0.1
1,916,451 - -0.7
1,916,457 - -1.7
1,916,457 - -1.4
1,916,468 + -0.4
1,916,512 + -0.2
1,916,512 + -1.1
1,916,520 - -0.8
1,916,520 - +1.7
1,916,520 - -1.9
1,916,520 - -0.0
1,916,629 + +0.4
1,916,637 - -0.8
1,916,659 + +0.4
1,916,674 + PGA1_c18350 0.11 +0.7
1,916,762 + PGA1_c18350 0.32 +0.7
1,916,763 - PGA1_c18350 0.32 +1.0
1,916,777 + PGA1_c18350 0.35 -0.7
1,916,777 + PGA1_c18350 0.35 +0.1
1,916,783 + PGA1_c18350 0.37 +0.3
1,916,783 + PGA1_c18350 0.37 -0.9
1,916,791 - PGA1_c18350 0.39 +2.5
1,916,823 + PGA1_c18350 0.46 +0.4
1,916,859 - PGA1_c18350 0.55 +0.6
1,916,973 - PGA1_c18350 0.81 +0.5
1,916,985 - PGA1_c18350 0.84 +1.8
1,917,003 + PGA1_c18350 0.88 +0.9
1,917,012 - -1.3
1,917,036 + +0.5
1,917,057 + -0.7
1,917,072 + -1.1
1,917,112 - PGA1_c18360 0.12 -1.9
1,917,157 - PGA1_c18360 0.20 -1.0
1,917,187 - PGA1_c18360 0.26 -1.0
1,917,193 + PGA1_c18360 0.27 -0.8
1,917,193 + PGA1_c18360 0.27 -0.4
1,917,193 + PGA1_c18360 0.27 +0.1
1,917,201 - PGA1_c18360 0.29 -0.7
1,917,239 + PGA1_c18360 0.36 +0.9
1,917,247 - PGA1_c18360 0.37 -1.3
1,917,274 + PGA1_c18360 0.42 -0.5
1,917,299 + PGA1_c18360 0.47 -1.1
1,917,300 + PGA1_c18360 0.47 +0.1
1,917,308 - PGA1_c18360 0.49 +0.5
1,917,308 - PGA1_c18360 0.49 -0.2
1,917,396 - PGA1_c18360 0.65 -0.5
1,917,398 + PGA1_c18360 0.66 -1.1
1,917,425 - PGA1_c18360 0.71 -1.3
1,917,484 + PGA1_c18360 0.82 -0.0
1,917,484 + PGA1_c18360 0.82 +0.2
1,917,492 + PGA1_c18360 0.83 +0.0
1,917,492 - PGA1_c18360 0.83 +1.0
1,917,500 - PGA1_c18360 0.85 -0.4
1,917,500 - PGA1_c18360 0.85 -1.3
1,917,507 - PGA1_c18360 0.86 +0.9
1,917,511 + PGA1_c18360 0.87 -1.1
1,917,519 - PGA1_c18360 0.88 +0.1
1,917,582 + +0.2
1,917,590 - -0.1
1,917,590 - +0.3
1,917,590 - +0.2
1,917,590 - +0.7
1,917,623 - -1.8
1,917,687 + PGA1_c18370 0.18 +0.6
1,917,731 + PGA1_c18370 0.26 +1.2
1,917,736 + PGA1_c18370 0.27 -1.1
1,917,739 - PGA1_c18370 0.28 -0.1
1,917,751 - PGA1_c18370 0.30 -0.5
1,917,751 - PGA1_c18370 0.30 +0.3
1,917,777 + PGA1_c18370 0.35 +0.9
1,917,783 + PGA1_c18370 0.36 +0.1
1,917,807 + PGA1_c18370 0.40 -2.9
1,917,810 - PGA1_c18370 0.41 -1.1
1,917,830 - PGA1_c18370 0.44 +1.0
1,917,926 - PGA1_c18370 0.62 +1.1
1,917,977 + PGA1_c18370 0.71 +0.4
1,917,977 + PGA1_c18370 0.71 -0.6
1,917,977 + PGA1_c18370 0.71 -1.7
1,918,020 + PGA1_c18370 0.79 -0.1

Or see this region's nucleotide sequence