Strain Fitness in Marinobacter adhaerens HP15 around HP15_1580

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1579 and HP15_1580 are separated by 57 nucleotidesHP15_1580 and HP15_1581 overlap by 4 nucleotides HP15_1579: HP15_1579 - type I site-specific restriction-modification system, S subunit, at 1,665,738 to 1,667,021 _1579 HP15_1580: HP15_1580 - protein containing DUF262, at 1,667,079 to 1,668,440 _1580 HP15_1581: HP15_1581 - protein containing DUF262, at 1,668,437 to 1,670,443 _1581 Position (kb) 1667 1668 1669Strain fitness (log2 ratio) -2 -1 0 1 2at 1666.173 kb on - strand, within HP15_1579at 1666.548 kb on - strand, within HP15_1579at 1666.555 kb on - strand, within HP15_1579at 1666.557 kb on - strand, within HP15_1579at 1666.557 kb on - strand, within HP15_1579at 1666.664 kb on - strand, within HP15_1579at 1666.780 kb on + strand, within HP15_1579at 1666.782 kb on + strand, within HP15_1579at 1666.828 kb on + strand, within HP15_1579at 1666.892 kb on + strand, within HP15_1579at 1666.900 kb on - strandat 1666.962 kb on + strandat 1667.010 kb on + strandat 1667.010 kb on + strandat 1667.061 kb on - strandat 1667.063 kb on + strandat 1667.136 kb on - strandat 1667.194 kb on - strandat 1667.278 kb on + strand, within HP15_1580at 1667.349 kb on + strand, within HP15_1580at 1667.349 kb on - strand, within HP15_1580at 1667.396 kb on + strand, within HP15_1580at 1667.445 kb on - strand, within HP15_1580at 1667.610 kb on - strand, within HP15_1580at 1667.618 kb on + strand, within HP15_1580at 1667.649 kb on + strand, within HP15_1580at 1667.808 kb on + strand, within HP15_1580at 1667.847 kb on + strand, within HP15_1580at 1667.887 kb on + strand, within HP15_1580at 1667.918 kb on + strand, within HP15_1580at 1667.944 kb on + strand, within HP15_1580at 1667.952 kb on - strand, within HP15_1580at 1668.039 kb on - strand, within HP15_1580at 1668.142 kb on - strand, within HP15_1580at 1668.144 kb on + strand, within HP15_1580at 1668.166 kb on - strand, within HP15_1580at 1668.219 kb on + strand, within HP15_1580at 1668.232 kb on - strand, within HP15_1580at 1668.429 kb on + strandat 1668.437 kb on - strandat 1668.439 kb on - strandat 1668.460 kb on + strandat 1668.468 kb on - strandat 1668.511 kb on - strandat 1668.537 kb on + strandat 1668.812 kb on - strand, within HP15_1581at 1668.875 kb on + strand, within HP15_1581at 1668.878 kb on - strand, within HP15_1581at 1668.898 kb on - strand, within HP15_1581at 1669.008 kb on + strand, within HP15_1581at 1669.045 kb on - strand, within HP15_1581at 1669.193 kb on - strand, within HP15_1581at 1669.235 kb on + strand, within HP15_1581at 1669.303 kb on + strand, within HP15_1581at 1669.311 kb on - strand, within HP15_1581at 1669.367 kb on - strand, within HP15_1581

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,666,173 - HP15_1579 0.34 -1.2
1,666,548 - HP15_1579 0.63 +0.4
1,666,555 - HP15_1579 0.64 +0.3
1,666,557 - HP15_1579 0.64 -0.6
1,666,557 - HP15_1579 0.64 +1.3
1,666,664 - HP15_1579 0.72 -0.4
1,666,780 + HP15_1579 0.81 -1.1
1,666,782 + HP15_1579 0.81 -0.8
1,666,828 + HP15_1579 0.85 -1.6
1,666,892 + HP15_1579 0.90 +1.4
1,666,900 - -0.0
1,666,962 + +0.2
1,667,010 + +0.1
1,667,010 + +0.1
1,667,061 - -0.4
1,667,063 + -0.6
1,667,136 - +0.1
1,667,194 - +0.4
1,667,278 + HP15_1580 0.15 +0.6
1,667,349 + HP15_1580 0.20 -0.3
1,667,349 - HP15_1580 0.20 -0.2
1,667,396 + HP15_1580 0.23 +1.8
1,667,445 - HP15_1580 0.27 -0.2
1,667,610 - HP15_1580 0.39 -0.7
1,667,618 + HP15_1580 0.40 +0.7
1,667,649 + HP15_1580 0.42 +1.0
1,667,808 + HP15_1580 0.54 -0.4
1,667,847 + HP15_1580 0.56 -0.8
1,667,887 + HP15_1580 0.59 +0.8
1,667,918 + HP15_1580 0.62 -0.2
1,667,944 + HP15_1580 0.64 -0.8
1,667,952 - HP15_1580 0.64 +0.4
1,668,039 - HP15_1580 0.70 -0.8
1,668,142 - HP15_1580 0.78 -0.8
1,668,144 + HP15_1580 0.78 +0.0
1,668,166 - HP15_1580 0.80 -1.8
1,668,219 + HP15_1580 0.84 -1.2
1,668,232 - HP15_1580 0.85 -0.2
1,668,429 + -0.2
1,668,437 - -0.7
1,668,439 - -0.5
1,668,460 + +1.5
1,668,468 - -0.1
1,668,511 - +0.9
1,668,537 + -0.1
1,668,812 - HP15_1581 0.19 +0.3
1,668,875 + HP15_1581 0.22 -0.9
1,668,878 - HP15_1581 0.22 +1.2
1,668,898 - HP15_1581 0.23 +0.1
1,669,008 + HP15_1581 0.28 +0.8
1,669,045 - HP15_1581 0.30 -1.6
1,669,193 - HP15_1581 0.38 +0.6
1,669,235 + HP15_1581 0.40 -0.5
1,669,303 + HP15_1581 0.43 +0.6
1,669,311 - HP15_1581 0.44 -0.5
1,669,367 - HP15_1581 0.46 -0.2

Or see this region's nucleotide sequence