Strain Fitness in Shewanella amazonensis SB2B around Sama_3143

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
3,729,750	+		Sama_3142	0.24	-1.2
3,729,750	+		Sama_3142	0.24	+1.1
3,729,750	+		Sama_3142	0.24	+1.1
3,729,750	+		Sama_3142	0.24	-0.6
3,729,751	-		Sama_3142	0.24	-0.8
3,729,867	+		Sama_3142	0.34	-0.3
3,729,873	+		Sama_3142	0.34	-0.2
3,729,873	+		Sama_3142	0.34	+0.2
3,729,874	-		Sama_3142	0.34	-1.1
3,729,874	-		Sama_3142	0.34	-1.3
3,729,895	+		Sama_3142	0.36	+0.1
3,729,915	+		Sama_3142	0.38	-1.4
3,729,915	+		Sama_3142	0.38	-0.7
3,729,915	+		Sama_3142	0.38	+2.0
3,729,916	-		Sama_3142	0.38	-0.2
3,729,916	-		Sama_3142	0.38	+3.7
3,729,916	-		Sama_3142	0.38	-1.3
3,729,916	-		Sama_3142	0.38	+1.2
3,730,033	-		Sama_3142	0.48	-0.3
3,730,067	+		Sama_3142	0.51	+0.3
3,730,067	+		Sama_3142	0.51	+2.9
3,730,067	+		Sama_3142	0.51	+1.2
3,730,067	+		Sama_3142	0.51	+0.9
3,730,067	+		Sama_3142	0.51	-0.5
3,730,067	+		Sama_3142	0.51	+1.9
3,730,067	+		Sama_3142	0.51	-1.1
3,730,068	-		Sama_3142	0.51	-0.5
3,730,068	-		Sama_3142	0.51	-0.8
3,730,068	-		Sama_3142	0.51	+1.3
3,730,068	-		Sama_3142	0.51	+0.1
3,730,068	-		Sama_3142	0.51	+1.6
3,730,068	-		Sama_3142	0.51	+2.0
3,730,068	-		Sama_3142	0.51	-1.5
3,730,068	-		Sama_3142	0.51	-0.4
3,730,098	+		Sama_3142	0.53	-0.7
3,730,099	-		Sama_3142	0.53	-2.2
3,730,188	+		Sama_3142	0.61	-0.5
3,730,188	+		Sama_3142	0.61	-0.8
3,730,189	-		Sama_3142	0.61	+1.1
3,730,189	-		Sama_3142	0.61	+3.0
3,730,236	+		Sama_3142	0.65	-0.4
3,730,315	-		Sama_3142	0.71	-0.5
3,730,315	-		Sama_3142	0.71	+0.9
3,730,440	-		Sama_3142	0.82	-1.2
3,730,449	+		Sama_3142	0.82	-1.3
3,730,449	+		Sama_3142	0.82	+1.4
3,730,449	+		Sama_3142	0.82	-1.5
3,730,450	-		Sama_3142	0.83	+0.9
3,730,450	-		Sama_3142	0.83	-1.2
3,730,545	+				-1.2
3,730,545	+				+0.4
3,730,545	+				-0.6
3,730,548	+				+0.4
3,730,588	+				+1.5
3,730,589	-				-1.2
3,730,589	-				-0.2
3,730,710	-				+0.4
3,730,727	+				-1.9
3,730,729	+				+0.1
3,730,729	+				-0.1
3,730,729	+				+1.5
3,730,729	+				-1.7
3,730,730	-				-0.9
3,730,730	-				+0.2
3,730,730	-				+0.1
3,730,730	-				+0.9
3,730,730	-				+0.1
3,730,733	+				-0.0
3,730,733	+				-1.2
3,730,733	+				+0.3
3,730,733	+				-1.5
3,730,733	+				+0.6
3,730,733	+				+2.3
3,730,733	+				-0.6
3,730,734	-				+1.1
3,730,734	-				-0.3
3,730,734	-				+1.2
3,730,734	-				-0.2
3,730,734	-				+1.4
3,730,734	-				+2.7
3,730,737	+				-0.9
3,730,737	+				+1.1
3,730,737	+				-0.2
3,730,737	+				-1.6
3,730,738	-				-0.8
3,730,795	+		Sama_3143	0.20	-0.3
3,730,795	+		Sama_3143	0.20	-1.0
3,730,796	-		Sama_3143	0.20	-0.8
3,730,796	-		Sama_3143	0.20	-0.5
3,730,796	-		Sama_3143	0.20	-1.3
3,730,796	-		Sama_3143	0.20	-2.5
3,730,829	+		Sama_3143	0.32	+0.5
3,730,829	+		Sama_3143	0.32	+1.0
3,730,830	-		Sama_3143	0.32	+0.1
3,730,830	-		Sama_3143	0.32	-1.7
3,730,830	-		Sama_3143	0.32	+2.4
3,730,901	-		Sama_3143	0.56	-0.1
3,730,901	-		Sama_3143	0.56	+0.5
3,730,911	+		Sama_3143	0.60	-1.3
3,730,911	+		Sama_3143	0.60	-0.4
3,730,911	+		Sama_3143	0.60	-1.3
3,730,912	-		Sama_3143	0.60	-0.3
3,730,973	+		Sama_3143	0.81	-0.1
3,730,973	+		Sama_3143	0.81	-1.8
3,730,988	+		Sama_3143	0.86	+1.2
3,730,989	-		Sama_3143	0.86	+0.2
3,730,996	+		Sama_3143	0.88	-1.0
3,730,996	+		Sama_3143	0.88	-0.5
3,731,036	+				-0.2
3,731,067	+				+1.1
3,731,082	-				-2.9
3,731,082	-				-0.3
3,731,114	-				-1.3
3,731,124	-				-0.8
3,731,124	-				-0.6
3,731,124	-				-2.3
3,731,154	+				-0.4
3,731,179	+				-0.6
3,731,179	+				+0.1
3,731,179	+				+0.6
3,731,179	+				+0.2
3,731,179	+				-0.9
3,731,179	+				-1.1
3,731,180	-				-0.9
3,731,180	-				-1.4
3,731,180	-				+0.4
3,731,180	-				+2.1
3,731,180	-				-1.2
3,731,180	-				-0.5
3,731,180	-				+1.5
3,731,180	-				+2.7
3,731,180	-				+1.4
3,731,180	-				-1.8
3,731,202	-				-0.5
3,731,213	+				+0.9
3,731,213	+				-0.5
3,731,214	-				-0.8
3,731,214	-				+0.8
3,731,214	-				-0.6
3,731,214	-				-0.4
3,731,214	-				-2.1
3,731,298	-				+0.9
3,731,355	+				-1.0
3,731,355	+				-0.3
3,731,356	-				-0.3
3,731,356	-				+0.2
3,731,362	-				-0.4
3,731,413	+		Sama_3144	0.18	-0.7
3,731,414	-		Sama_3144	0.18	+2.4
3,731,435	+		Sama_3144	0.25	+0.1
3,731,435	+		Sama_3144	0.25	-0.2
3,731,436	-		Sama_3144	0.25	-0.6
3,731,532	+		Sama_3144	0.54	-0.7
3,731,533	-		Sama_3144	0.54	-0.0
3,731,543	+		Sama_3144	0.57	+1.7
3,731,543	+		Sama_3144	0.57	-0.7
3,731,639	+		Sama_3144	0.86	+3.0
3,731,675	-				-1.5
3,731,675	-				-1.0
3,731,686	+				+1.6
3,731,686	+				-1.1
3,731,686	+				-0.1
3,731,686	+				-0.0
3,731,686	+				-1.2
3,731,686	+				-0.0
3,731,686	+				-2.0
3,731,687	-				-1.7
3,731,687	-				+0.8
3,731,687	-				-0.4
3,731,687	-				+0.4
3,731,687	-				-2.0
3,731,717	+				-0.1
3,731,717	+				-0.7
3,731,717	+				+0.1
3,731,717	+				-1.0
3,731,718	-				-0.4
3,731,718	-				-0.4
3,731,771	+				-1.8
3,731,771	+				-0.2
3,731,771	+				+0.9
3,731,792	+				+0.1
3,731,792	+				-0.5
3,731,793	-				+0.8
3,731,793	-				-0.9
3,731,793	-				-2.4
3,731,793	-				-1.7
3,731,793	-				-1.9
3,731,801	+				+3.6
3,731,801	+				-1.2
3,731,801	+				-1.1
3,731,801	+				-1.7
3,731,801	+				-1.3
3,731,801	+				-0.7
3,731,801	+				+1.0
3,731,801	+				-2.6
3,731,801	+				-0.5
3,731,801	+				+0.1
3,731,801	+				-1.2
3,731,801	+				-0.8
3,731,802	-				-0.3
3,731,802	-				-0.4
3,731,802	-				-0.8
3,731,802	-				-1.7
3,731,802	-				+0.1
3,731,802	-				+0.5
3,731,802	-				-1.0
3,731,802	-				+1.1
3,731,802	-				-0.9
3,731,802	-				-0.3
3,731,802	-				-1.5
3,731,808	+				+0.3
3,731,809	-				+2.4
3,731,809	-				+0.1
3,731,809	-				-1.2
3,731,828	+				+1.4
3,731,828	+				+0.7
3,731,829	-				-1.0
3,731,839	+				-2.8
3,731,839	+				-0.9
3,731,839	+				-0.6
3,731,840	-				-0.5
3,731,840	-				-1.4
3,731,913	-				+2.7
3,731,913	-				-1.2
3,731,938	+				-0.5
3,731,938	+				+1.5
3,731,938	+				-1.0
3,731,938	+				-0.6
3,731,939	-				-1.6
3,731,939	-				+1.6
3,731,998	-		Sama_3145	0.12	+0.1
3,732,005	-		Sama_3145	0.13	-0.2