Strain Fitness in Shewanella amazonensis SB2B around Sama_2394

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
2,875,761	+		Sama_2393	0.76	-1.1
2,875,761	+		Sama_2393	0.76	+0.0
2,875,762	-		Sama_2393	0.76	-0.3
2,875,844	-		Sama_2393	0.79	+3.5
2,875,852	+		Sama_2393	0.80	+4.0
2,875,852	+		Sama_2393	0.80	-0.9
2,875,852	+		Sama_2393	0.80	-1.0
2,875,858	+		Sama_2393	0.80	-0.6
2,875,859	-		Sama_2393	0.80	+1.5
2,875,859	-		Sama_2393	0.80	-1.9
2,875,887	+		Sama_2393	0.81	-0.9
2,875,888	-		Sama_2393	0.81	+0.0
2,875,888	-		Sama_2393	0.81	+0.8
2,875,888	-		Sama_2393	0.81	-0.7
2,875,952	-		Sama_2393	0.83	-1.5
2,876,169	+				+2.1
2,876,170	-				-0.7
2,876,170	-				+0.6
2,876,290	+				+1.4
2,876,290	+				-0.4
2,876,291	-				+0.8
2,876,409	-				-0.5
2,876,449	+				-1.5
2,876,450	-				-0.1
2,876,450	-				+0.0
2,876,592	-				-1.5
2,876,592	-				+0.9
2,876,592	-				-0.8
2,876,592	-				+3.2
2,876,599	-				-0.2
2,876,599	-				+0.3
2,876,641	-				-0.6
2,876,658	+				-0.6
2,876,694	-				+0.6
2,876,694	-				-0.3
2,876,694	-				-0.4
2,876,710	+				+0.6
2,876,710	+				-0.1
2,876,711	-				-0.2
2,876,711	-				-1.0
2,876,711	-				-0.5
2,876,711	-				-0.3
2,876,711	-				-0.4
2,876,766	+				-1.5
2,876,830	+				+2.2
2,876,830	+				-0.5
2,876,830	+				+1.3
2,876,831	-				-0.1
2,876,831	-				+2.1
2,876,936	-		Sama_2394	0.11	-2.0
2,876,951	+		Sama_2394	0.12	+0.1
2,876,951	+		Sama_2394	0.12	-0.1
2,876,951	+		Sama_2394	0.12	+2.1
2,876,951	+		Sama_2394	0.12	+1.1
2,876,951	+		Sama_2394	0.12	-0.1
2,876,952	-		Sama_2394	0.12	-0.2
2,876,952	-		Sama_2394	0.12	+1.2
2,876,952	-		Sama_2394	0.12	-0.3
2,876,952	-		Sama_2394	0.12	-0.9
2,876,952	-		Sama_2394	0.12	+0.9
2,876,952	-		Sama_2394	0.12	+2.0
2,876,952	-		Sama_2394	0.12	-1.3
2,876,952	-		Sama_2394	0.12	+0.4
2,876,952	-		Sama_2394	0.12	-2.3
2,876,952	-		Sama_2394	0.12	-1.7
2,876,986	+		Sama_2394	0.14	-1.6
2,876,986	+		Sama_2394	0.14	-0.7
2,876,986	+		Sama_2394	0.14	-1.6
2,876,987	-		Sama_2394	0.15	+1.2
2,876,987	-		Sama_2394	0.15	+4.0
2,877,045	+		Sama_2394	0.18	-1.1
2,877,046	-		Sama_2394	0.18	+1.6
2,877,093	+		Sama_2394	0.21	+0.4
2,877,147	+		Sama_2394	0.24	-0.5
2,877,147	+		Sama_2394	0.24	+0.4
2,877,147	+		Sama_2394	0.24	-2.1
2,877,148	-		Sama_2394	0.24	-2.6
2,877,148	-		Sama_2394	0.24	-0.2
2,877,148	-		Sama_2394	0.24	-0.3
2,877,148	-		Sama_2394	0.24	+0.1
2,877,166	+		Sama_2394	0.25	+2.3
2,877,166	+		Sama_2394	0.25	-0.4
2,877,167	-		Sama_2394	0.25	+0.3
2,877,167	-		Sama_2394	0.25	-0.2
2,877,339	-		Sama_2394	0.35	+1.8
2,877,339	-		Sama_2394	0.35	-0.7
2,877,339	-		Sama_2394	0.35	-1.6
2,877,383	-		Sama_2394	0.38	+0.6
2,877,383	-		Sama_2394	0.38	+0.5
2,877,383	-		Sama_2394	0.38	-0.8
2,877,460	+		Sama_2394	0.43	+3.3
2,877,460	+		Sama_2394	0.43	+0.5
2,877,469	-		Sama_2394	0.43	-1.5
2,877,511	+		Sama_2394	0.46	+2.8
2,877,511	+		Sama_2394	0.46	+3.9
2,877,511	-		Sama_2394	0.46	+0.9
2,877,512	-		Sama_2394	0.46	-0.8
2,877,542	-		Sama_2394	0.48	-1.3
2,877,558	+		Sama_2394	0.49	+0.6
2,877,562	+		Sama_2394	0.49	-1.4
2,877,562	+		Sama_2394	0.49	-1.6
2,877,562	+		Sama_2394	0.49	-0.1
2,877,562	+		Sama_2394	0.49	-0.7
2,877,562	+		Sama_2394	0.49	-0.5
2,877,562	+		Sama_2394	0.49	-0.6
2,877,562	+		Sama_2394	0.49	+0.6
2,877,562	+		Sama_2394	0.49	-1.0
2,877,563	-		Sama_2394	0.49	+0.9
2,877,563	-		Sama_2394	0.49	+2.2
2,877,563	-		Sama_2394	0.49	-2.0
2,877,707	+		Sama_2394	0.57	-0.7
2,877,707	+		Sama_2394	0.57	-1.9
2,877,707	+		Sama_2394	0.57	-1.6
2,877,708	-		Sama_2394	0.57	-0.7
2,877,736	-		Sama_2394	0.59	-1.4
2,877,736	-		Sama_2394	0.59	+1.6
2,877,736	-		Sama_2394	0.59	-2.6
2,877,736	-		Sama_2394	0.59	-0.8
2,877,989	+		Sama_2394	0.74	-0.2
2,878,002	+		Sama_2394	0.75	-0.5
2,878,002	+		Sama_2394	0.75	-0.5
2,878,003	-		Sama_2394	0.75	+0.5
2,878,004	+		Sama_2394	0.75	-3.2
2,878,004	+		Sama_2394	0.75	-1.1
2,878,004	+		Sama_2394	0.75	-0.4
2,878,004	+		Sama_2394	0.75	+1.9
2,878,004	+		Sama_2394	0.75	+1.2
2,878,005	-		Sama_2394	0.75	-0.6
2,878,005	-		Sama_2394	0.75	-2.3
2,878,005	-		Sama_2394	0.75	-0.5
2,878,041	+		Sama_2394	0.77	-2.1
2,878,042	-		Sama_2394	0.77	-1.6
2,878,072	+		Sama_2394	0.79	-0.7
2,878,073	-		Sama_2394	0.79	-0.8
2,878,073	-		Sama_2394	0.79	+1.2
2,878,073	-		Sama_2394	0.79	-0.7
2,878,157	+		Sama_2394	0.84	-0.4
2,878,157	+		Sama_2394	0.84	+2.9
2,878,158	-		Sama_2394	0.84	-1.4
2,878,158	-		Sama_2394	0.84	+1.4
2,878,158	-		Sama_2394	0.84	+0.1
2,878,193	-		Sama_2394	0.86	-0.7
2,878,263	-				-1.5
2,878,263	-				-0.3
2,878,288	-				-0.6
2,878,360	+				-0.6
2,878,363	+				-0.5
2,878,364	-				-1.0
2,878,364	-				+0.4
2,878,407	+				+1.1
2,878,408	-				+1.4
2,878,421	-				-1.8
2,878,573	-		Sama_2395	0.18	-0.1
2,878,581	+		Sama_2395	0.19	-0.1
2,878,581	+		Sama_2395	0.19	-2.8
2,878,582	-		Sama_2395	0.19	-1.5
2,878,582	-		Sama_2395	0.19	-2.3
2,878,587	+		Sama_2395	0.20	-1.1
2,878,587	+		Sama_2395	0.20	-0.6
2,878,588	-		Sama_2395	0.20	-0.8
2,878,588	-		Sama_2395	0.20	+0.6
2,878,612	+		Sama_2395	0.23	-1.3
2,878,612	+		Sama_2395	0.23	-0.8
2,878,613	-		Sama_2395	0.23	-1.5
2,878,641	+		Sama_2395	0.27	-0.6
2,878,674	-		Sama_2395	0.32	-0.6
2,878,761	+		Sama_2395	0.44	-0.6
2,878,762	-		Sama_2395	0.44	-1.6
2,878,762	-		Sama_2395	0.44	-2.0
2,878,762	-		Sama_2395	0.44	-0.3
2,878,762	-		Sama_2395	0.44	-1.1
2,878,762	-		Sama_2395	0.44	-0.5
2,878,811	+		Sama_2395	0.51	-3.1
2,878,836	+		Sama_2395	0.54	-0.9
2,878,836	+		Sama_2395	0.54	+0.0
2,878,856	+		Sama_2395	0.57	-0.8
2,878,896	-		Sama_2395	0.62	-2.1
2,879,009	+		Sama_2395	0.78	-0.3
2,879,075	+		Sama_2395	0.87	+0.5
2,879,075	+		Sama_2395	0.87	+0.9
2,879,198	+				-2.3
2,879,198	+				+0.4
2,879,199	-				+1.4
2,879,206	+				-1.2
2,879,207	-				-1.1
2,879,207	-				+5.3
2,879,258	-				-2.4
2,879,286	+				-1.3
2,879,286	+				-0.6
2,879,286	+				-1.1
2,879,287	-				-0.8
2,879,287	-				-0.4
2,879,287	-				-1.0
2,879,287	-				-0.6