Strain Fitness in Shewanella amazonensis SB2B around Sama_1312

Experiment: NAG (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_1310 and Sama_1311 are separated by 140 nucleotidesSama_1311 and recR are separated by 13 nucleotidesrecR and Sama_1313 are separated by 181 nucleotides Sama_1310: Sama_1310 - DNA-directed DNA polymerase (RefSeq), at 1,592,157 to 1,594,886 _1310 Sama_1311: Sama_1311 - hypothetical protein (RefSeq), at 1,595,027 to 1,595,356 _1311 Sama_1312: recR - recombination protein RecR (RefSeq), at 1,595,370 to 1,595,969 recR Sama_1313: Sama_1313 - heat shock protein 90 (RefSeq), at 1,596,151 to 1,598,064 _1313 Position (kb) 1595 1596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1594.896 kb on - strandat 1594.896 kb on - strandat 1594.896 kb on - strandat 1594.918 kb on + strandat 1594.919 kb on - strandat 1594.949 kb on + strandat 1594.950 kb on - strandat 1595.020 kb on + strandat 1595.026 kb on + strandat 1595.026 kb on + strandat 1595.026 kb on + strandat 1595.027 kb on - strandat 1595.181 kb on + strand, within Sama_1311at 1595.221 kb on + strand, within Sama_1311at 1595.481 kb on - strand, within recRat 1595.552 kb on + strand, within recRat 1595.644 kb on + strand, within recRat 1595.645 kb on - strand, within recRat 1595.683 kb on - strand, within recRat 1595.704 kb on + strand, within recRat 1595.704 kb on + strand, within recRat 1595.704 kb on + strand, within recRat 1595.704 kb on + strand, within recRat 1595.704 kb on + strand, within recRat 1595.705 kb on - strand, within recRat 1595.705 kb on - strand, within recRat 1595.705 kb on - strand, within recRat 1595.705 kb on - strand, within recRat 1595.705 kb on - strand, within recRat 1595.808 kb on - strand, within recRat 1595.835 kb on + strand, within recRat 1595.835 kb on + strand, within recRat 1595.835 kb on + strand, within recRat 1595.835 kb on + strand, within recRat 1595.835 kb on + strand, within recRat 1595.836 kb on - strand, within recRat 1595.836 kb on - strand, within recRat 1595.836 kb on - strand, within recRat 1595.836 kb on - strand, within recRat 1595.866 kb on + strand, within recRat 1595.967 kb on + strandat 1595.977 kb on - strandat 1596.100 kb on + strandat 1596.100 kb on + strandat 1596.100 kb on + strandat 1596.101 kb on - strandat 1596.101 kb on - strandat 1596.110 kb on + strandat 1596.110 kb on + strandat 1596.111 kb on - strandat 1596.111 kb on - strandat 1596.127 kb on - strandat 1596.149 kb on - strandat 1596.224 kb on - strandat 1596.293 kb on - strandat 1596.319 kb on + strandat 1596.319 kb on + strandat 1596.320 kb on - strandat 1596.320 kb on - strandat 1596.344 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.383 kb on + strand, within Sama_1313at 1596.384 kb on - strand, within Sama_1313at 1596.384 kb on - strand, within Sama_1313at 1596.384 kb on - strand, within Sama_1313at 1596.402 kb on + strand, within Sama_1313at 1596.402 kb on + strand, within Sama_1313at 1596.402 kb on + strand, within Sama_1313at 1596.402 kb on + strand, within Sama_1313at 1596.403 kb on - strand, within Sama_1313at 1596.453 kb on + strand, within Sama_1313at 1596.543 kb on + strand, within Sama_1313at 1596.543 kb on + strand, within Sama_1313at 1596.588 kb on + strand, within Sama_1313at 1596.588 kb on + strand, within Sama_1313at 1596.588 kb on + strand, within Sama_1313at 1596.630 kb on + strand, within Sama_1313at 1596.630 kb on + strand, within Sama_1313at 1596.748 kb on + strand, within Sama_1313at 1596.759 kb on + strand, within Sama_1313at 1596.759 kb on + strand, within Sama_1313at 1596.759 kb on + strand, within Sama_1313at 1596.760 kb on - strand, within Sama_1313at 1596.774 kb on - strand, within Sama_1313at 1596.781 kb on + strand, within Sama_1313at 1596.781 kb on + strand, within Sama_1313at 1596.856 kb on - strand, within Sama_1313at 1596.913 kb on + strand, within Sama_1313at 1596.914 kb on - strand, within Sama_1313at 1596.914 kb on - strand, within Sama_1313at 1596.925 kb on + strand, within Sama_1313at 1596.925 kb on + strand, within Sama_1313

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
remove
1,594,896 - +0.1
1,594,896 - -0.2
1,594,896 - -1.4
1,594,918 + -1.2
1,594,919 - +0.3
1,594,949 + +0.4
1,594,950 - -0.6
1,595,020 + -2.1
1,595,026 + -1.2
1,595,026 + +1.1
1,595,026 + -2.2
1,595,027 - -0.2
1,595,181 + Sama_1311 0.47 +0.5
1,595,221 + Sama_1311 0.59 +1.0
1,595,481 - recR Sama_1312 0.18 -0.4
1,595,552 + recR Sama_1312 0.30 +4.4
1,595,644 + recR Sama_1312 0.46 +2.3
1,595,645 - recR Sama_1312 0.46 -0.8
1,595,683 - recR Sama_1312 0.52 -0.3
1,595,704 + recR Sama_1312 0.56 -1.4
1,595,704 + recR Sama_1312 0.56 -1.4
1,595,704 + recR Sama_1312 0.56 -0.7
1,595,704 + recR Sama_1312 0.56 +4.5
1,595,704 + recR Sama_1312 0.56 +0.4
1,595,705 - recR Sama_1312 0.56 +0.1
1,595,705 - recR Sama_1312 0.56 -1.3
1,595,705 - recR Sama_1312 0.56 +2.8
1,595,705 - recR Sama_1312 0.56 -1.2
1,595,705 - recR Sama_1312 0.56 -0.9
1,595,808 - recR Sama_1312 0.73 +1.5
1,595,835 + recR Sama_1312 0.78 -1.6
1,595,835 + recR Sama_1312 0.78 +2.9
1,595,835 + recR Sama_1312 0.78 -0.6
1,595,835 + recR Sama_1312 0.78 -2.1
1,595,835 + recR Sama_1312 0.78 +1.0
1,595,836 - recR Sama_1312 0.78 +0.1
1,595,836 - recR Sama_1312 0.78 +0.7
1,595,836 - recR Sama_1312 0.78 +0.1
1,595,836 - recR Sama_1312 0.78 -1.3
1,595,866 + recR Sama_1312 0.83 -1.0
1,595,967 + -0.5
1,595,977 - -1.6
1,596,100 + -0.0
1,596,100 + -0.2
1,596,100 + +2.3
1,596,101 - -1.3
1,596,101 - -1.5
1,596,110 + -1.2
1,596,110 + +0.5
1,596,111 - -1.3
1,596,111 - -0.3
1,596,127 - -1.6
1,596,149 - -0.6
1,596,224 - -1.9
1,596,293 - -1.2
1,596,319 + +0.3
1,596,319 + +0.4
1,596,320 - -0.5
1,596,320 - -0.5
1,596,344 + Sama_1313 0.10 -0.5
1,596,383 + Sama_1313 0.12 -1.5
1,596,383 + Sama_1313 0.12 -2.3
1,596,383 + Sama_1313 0.12 -0.7
1,596,383 + Sama_1313 0.12 -0.9
1,596,383 + Sama_1313 0.12 -1.5
1,596,383 + Sama_1313 0.12 -0.6
1,596,384 - Sama_1313 0.12 -1.4
1,596,384 - Sama_1313 0.12 -3.0
1,596,384 - Sama_1313 0.12 +0.7
1,596,402 + Sama_1313 0.13 +0.5
1,596,402 + Sama_1313 0.13 -1.5
1,596,402 + Sama_1313 0.13 +1.0
1,596,402 + Sama_1313 0.13 +0.3
1,596,403 - Sama_1313 0.13 -1.0
1,596,453 + Sama_1313 0.16 -0.5
1,596,543 + Sama_1313 0.20 +2.3
1,596,543 + Sama_1313 0.20 -0.3
1,596,588 + Sama_1313 0.23 -0.0
1,596,588 + Sama_1313 0.23 -0.3
1,596,588 + Sama_1313 0.23 -2.1
1,596,630 + Sama_1313 0.25 -2.7
1,596,630 + Sama_1313 0.25 -0.8
1,596,748 + Sama_1313 0.31 -0.5
1,596,759 + Sama_1313 0.32 -2.2
1,596,759 + Sama_1313 0.32 -1.9
1,596,759 + Sama_1313 0.32 -0.0
1,596,760 - Sama_1313 0.32 -1.0
1,596,774 - Sama_1313 0.33 -2.2
1,596,781 + Sama_1313 0.33 -1.1
1,596,781 + Sama_1313 0.33 -0.9
1,596,856 - Sama_1313 0.37 +0.3
1,596,913 + Sama_1313 0.40 -1.2
1,596,914 - Sama_1313 0.40 -2.1
1,596,914 - Sama_1313 0.40 -1.6
1,596,925 + Sama_1313 0.40 -0.5
1,596,925 + Sama_1313 0.40 -1.5

Or see this region's nucleotide sequence