Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1310 and Sama_1311 are separated by 140 nucleotides Sama_1311 and recR are separated by 13 nucleotides recR and Sama_1313 are separated by 181 nucleotides
Sama_1310: Sama_1310 - DNA-directed DNA polymerase (RefSeq), at 1,592,157 to 1,594,886
_1310
Sama_1311: Sama_1311 - hypothetical protein (RefSeq), at 1,595,027 to 1,595,356
_1311
Sama_1312: recR - recombination protein RecR (RefSeq), at 1,595,370 to 1,595,969
recR
Sama_1313: Sama_1313 - heat shock protein 90 (RefSeq), at 1,596,151 to 1,598,064
_1313
Position (kb)
1595
1596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1594.896 kb on - strand at 1594.896 kb on - strand at 1594.896 kb on - strand at 1594.918 kb on + strand at 1594.919 kb on - strand at 1594.949 kb on + strand at 1594.950 kb on - strand at 1595.020 kb on + strand at 1595.026 kb on + strand at 1595.026 kb on + strand at 1595.026 kb on + strand at 1595.027 kb on - strand at 1595.181 kb on + strand, within Sama_1311 at 1595.221 kb on + strand, within Sama_1311 at 1595.481 kb on - strand, within recR at 1595.552 kb on + strand, within recR at 1595.644 kb on + strand, within recR at 1595.645 kb on - strand, within recR at 1595.683 kb on - strand, within recR at 1595.704 kb on + strand, within recR at 1595.704 kb on + strand, within recR at 1595.704 kb on + strand, within recR at 1595.704 kb on + strand, within recR at 1595.704 kb on + strand, within recR at 1595.705 kb on - strand, within recR at 1595.705 kb on - strand, within recR at 1595.705 kb on - strand, within recR at 1595.705 kb on - strand, within recR at 1595.705 kb on - strand, within recR at 1595.808 kb on - strand, within recR at 1595.835 kb on + strand, within recR at 1595.835 kb on + strand, within recR at 1595.835 kb on + strand, within recR at 1595.835 kb on + strand, within recR at 1595.835 kb on + strand, within recR at 1595.836 kb on - strand, within recR at 1595.836 kb on - strand, within recR at 1595.836 kb on - strand, within recR at 1595.836 kb on - strand, within recR at 1595.866 kb on + strand, within recR at 1595.967 kb on + strand at 1595.977 kb on - strand at 1596.100 kb on + strand at 1596.100 kb on + strand at 1596.100 kb on + strand at 1596.101 kb on - strand at 1596.101 kb on - strand at 1596.110 kb on + strand at 1596.110 kb on + strand at 1596.111 kb on - strand at 1596.111 kb on - strand at 1596.127 kb on - strand at 1596.149 kb on - strand at 1596.224 kb on - strand at 1596.293 kb on - strand at 1596.319 kb on + strand at 1596.319 kb on + strand at 1596.320 kb on - strand at 1596.320 kb on - strand at 1596.344 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.383 kb on + strand, within Sama_1313 at 1596.384 kb on - strand, within Sama_1313 at 1596.384 kb on - strand, within Sama_1313 at 1596.384 kb on - strand, within Sama_1313 at 1596.402 kb on + strand, within Sama_1313 at 1596.402 kb on + strand, within Sama_1313 at 1596.402 kb on + strand, within Sama_1313 at 1596.402 kb on + strand, within Sama_1313 at 1596.403 kb on - strand, within Sama_1313 at 1596.453 kb on + strand, within Sama_1313 at 1596.543 kb on + strand, within Sama_1313 at 1596.543 kb on + strand, within Sama_1313 at 1596.588 kb on + strand, within Sama_1313 at 1596.588 kb on + strand, within Sama_1313 at 1596.588 kb on + strand, within Sama_1313 at 1596.630 kb on + strand, within Sama_1313 at 1596.630 kb on + strand, within Sama_1313 at 1596.748 kb on + strand, within Sama_1313 at 1596.759 kb on + strand, within Sama_1313 at 1596.759 kb on + strand, within Sama_1313 at 1596.759 kb on + strand, within Sama_1313 at 1596.760 kb on - strand, within Sama_1313 at 1596.774 kb on - strand, within Sama_1313 at 1596.781 kb on + strand, within Sama_1313 at 1596.781 kb on + strand, within Sama_1313 at 1596.856 kb on - strand, within Sama_1313 at 1596.913 kb on + strand, within Sama_1313 at 1596.914 kb on - strand, within Sama_1313 at 1596.914 kb on - strand, within Sama_1313 at 1596.925 kb on + strand, within Sama_1313 at 1596.925 kb on + strand, within Sama_1313
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 1,594,896 - +0.1 1,594,896 - -0.2 1,594,896 - -1.4 1,594,918 + -1.2 1,594,919 - +0.3 1,594,949 + +0.4 1,594,950 - -0.6 1,595,020 + -2.1 1,595,026 + -1.2 1,595,026 + +1.1 1,595,026 + -2.2 1,595,027 - -0.2 1,595,181 + Sama_1311 0.47 +0.5 1,595,221 + Sama_1311 0.59 +1.0 1,595,481 - recR Sama_1312 0.18 -0.4 1,595,552 + recR Sama_1312 0.30 +4.4 1,595,644 + recR Sama_1312 0.46 +2.3 1,595,645 - recR Sama_1312 0.46 -0.8 1,595,683 - recR Sama_1312 0.52 -0.3 1,595,704 + recR Sama_1312 0.56 -1.4 1,595,704 + recR Sama_1312 0.56 -1.4 1,595,704 + recR Sama_1312 0.56 -0.7 1,595,704 + recR Sama_1312 0.56 +4.5 1,595,704 + recR Sama_1312 0.56 +0.4 1,595,705 - recR Sama_1312 0.56 +0.1 1,595,705 - recR Sama_1312 0.56 -1.3 1,595,705 - recR Sama_1312 0.56 +2.8 1,595,705 - recR Sama_1312 0.56 -1.2 1,595,705 - recR Sama_1312 0.56 -0.9 1,595,808 - recR Sama_1312 0.73 +1.5 1,595,835 + recR Sama_1312 0.78 -1.6 1,595,835 + recR Sama_1312 0.78 +2.9 1,595,835 + recR Sama_1312 0.78 -0.6 1,595,835 + recR Sama_1312 0.78 -2.1 1,595,835 + recR Sama_1312 0.78 +1.0 1,595,836 - recR Sama_1312 0.78 +0.1 1,595,836 - recR Sama_1312 0.78 +0.7 1,595,836 - recR Sama_1312 0.78 +0.1 1,595,836 - recR Sama_1312 0.78 -1.3 1,595,866 + recR Sama_1312 0.83 -1.0 1,595,967 + -0.5 1,595,977 - -1.6 1,596,100 + -0.0 1,596,100 + -0.2 1,596,100 + +2.3 1,596,101 - -1.3 1,596,101 - -1.5 1,596,110 + -1.2 1,596,110 + +0.5 1,596,111 - -1.3 1,596,111 - -0.3 1,596,127 - -1.6 1,596,149 - -0.6 1,596,224 - -1.9 1,596,293 - -1.2 1,596,319 + +0.3 1,596,319 + +0.4 1,596,320 - -0.5 1,596,320 - -0.5 1,596,344 + Sama_1313 0.10 -0.5 1,596,383 + Sama_1313 0.12 -1.5 1,596,383 + Sama_1313 0.12 -2.3 1,596,383 + Sama_1313 0.12 -0.7 1,596,383 + Sama_1313 0.12 -0.9 1,596,383 + Sama_1313 0.12 -1.5 1,596,383 + Sama_1313 0.12 -0.6 1,596,384 - Sama_1313 0.12 -1.4 1,596,384 - Sama_1313 0.12 -3.0 1,596,384 - Sama_1313 0.12 +0.7 1,596,402 + Sama_1313 0.13 +0.5 1,596,402 + Sama_1313 0.13 -1.5 1,596,402 + Sama_1313 0.13 +1.0 1,596,402 + Sama_1313 0.13 +0.3 1,596,403 - Sama_1313 0.13 -1.0 1,596,453 + Sama_1313 0.16 -0.5 1,596,543 + Sama_1313 0.20 +2.3 1,596,543 + Sama_1313 0.20 -0.3 1,596,588 + Sama_1313 0.23 -0.0 1,596,588 + Sama_1313 0.23 -0.3 1,596,588 + Sama_1313 0.23 -2.1 1,596,630 + Sama_1313 0.25 -2.7 1,596,630 + Sama_1313 0.25 -0.8 1,596,748 + Sama_1313 0.31 -0.5 1,596,759 + Sama_1313 0.32 -2.2 1,596,759 + Sama_1313 0.32 -1.9 1,596,759 + Sama_1313 0.32 -0.0 1,596,760 - Sama_1313 0.32 -1.0 1,596,774 - Sama_1313 0.33 -2.2 1,596,781 + Sama_1313 0.33 -1.1 1,596,781 + Sama_1313 0.33 -0.9 1,596,856 - Sama_1313 0.37 +0.3 1,596,913 + Sama_1313 0.40 -1.2 1,596,914 - Sama_1313 0.40 -2.1 1,596,914 - Sama_1313 0.40 -1.6 1,596,925 + Sama_1313 0.40 -0.5 1,596,925 + Sama_1313 0.40 -1.5
Or see this region's nucleotide sequence