Strain Fitness in Shewanella amazonensis SB2B around Sama_1125

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
1,373,955	+		Sama_1122	0.77	+0.2
1,373,956	-		Sama_1122	0.77	-0.6
1,373,985	+		Sama_1122	0.80	-0.6
1,374,163	-				-0.7
1,374,173	+		Sama_1123	0.12	+0.4
1,374,173	+		Sama_1123	0.12	+2.3
1,374,179	+		Sama_1123	0.14	-1.0
1,374,204	+		Sama_1123	0.22	+1.2
1,374,278	+		Sama_1123	0.46	-0.7
1,374,278	+		Sama_1123	0.46	+0.2
1,374,279	-		Sama_1123	0.47	-1.2
1,374,327	+		Sama_1123	0.62	-2.5
1,374,339	-		Sama_1123	0.66	-1.1
1,374,339	-		Sama_1123	0.66	+2.7
1,374,403	+		Sama_1123	0.87	-2.1
1,374,443	+				-1.2
1,374,443	+				-1.6
1,374,443	+				-1.1
1,374,443	+				-1.1
1,374,444	-				+0.3
1,374,444	-				-0.9
1,374,444	-				+0.0
1,374,508	-				-1.6
1,374,574	+				-0.8
1,374,574	+				-1.8
1,374,575	-				-1.5
1,374,575	-				-1.6
1,374,600	+				+0.4
1,374,600	+				-0.2
1,374,601	-				+3.0
1,374,705	-		Sama_1124	0.33	-2.4
1,374,719	-		Sama_1124	0.37	-0.0
1,374,845	-		Sama_1124	0.72	-0.7
1,374,886	+		Sama_1124	0.83	+0.2
1,374,889	+		Sama_1124	0.84	+3.3
1,374,890	-		Sama_1124	0.85	+1.7
1,374,890	-		Sama_1124	0.85	-2.7
1,374,890	-		Sama_1124	0.85	+0.0
1,374,890	-		Sama_1124	0.85	+1.2
1,374,947	+				-0.4
1,374,947	+				-0.9
1,374,947	+				-0.7
1,374,947	+				-0.2
1,374,948	-				+0.2
1,374,948	-				+1.3
1,374,948	-				+0.1
1,374,952	-				+0.2
1,374,952	-				+0.9
1,374,952	-				-0.3
1,374,952	-				+2.1
1,374,955	+				-0.6
1,375,018	+		Sama_1125	0.31	+3.6
1,375,078	+		Sama_1125	0.57	-0.8
1,375,078	+		Sama_1125	0.57	-0.3
1,375,078	+		Sama_1125	0.57	+0.7
1,375,078	+		Sama_1125	0.57	-0.2
1,375,078	+		Sama_1125	0.57	-0.6
1,375,078	+		Sama_1125	0.57	-1.4
1,375,078	+		Sama_1125	0.57	+0.5
1,375,078	+		Sama_1125	0.57	-0.1
1,375,078	+		Sama_1125	0.57	-0.4
1,375,078	+		Sama_1125	0.57	+0.9
1,375,078	+		Sama_1125	0.57	+1.3
1,375,078	+		Sama_1125	0.57	-0.4
1,375,078	+		Sama_1125	0.57	+2.1
1,375,079	-		Sama_1125	0.58	+0.4
1,375,079	-		Sama_1125	0.58	-0.0
1,375,079	-		Sama_1125	0.58	-0.7
1,375,079	-		Sama_1125	0.58	-1.0
1,375,079	-		Sama_1125	0.58	-1.6
1,375,079	-		Sama_1125	0.58	+1.0
1,375,079	-		Sama_1125	0.58	+2.0
1,375,079	-		Sama_1125	0.58	-0.3
1,375,079	-		Sama_1125	0.58	+0.4
1,375,079	-		Sama_1125	0.58	-0.7
1,375,079	-		Sama_1125	0.58	+0.9
1,375,079	-		Sama_1125	0.58	+0.9
1,375,080	+		Sama_1125	0.58	-0.8
1,375,080	+		Sama_1125	0.58	-0.1
1,375,080	+		Sama_1125	0.58	+1.0
1,375,080	+		Sama_1125	0.58	+1.4
1,375,080	+		Sama_1125	0.58	-2.0
1,375,081	-		Sama_1125	0.58	-1.1
1,375,081	-		Sama_1125	0.58	-0.6
1,375,081	-		Sama_1125	0.58	+1.9
1,375,083	+		Sama_1125	0.59	-1.0
1,375,083	+		Sama_1125	0.59	+0.1
1,375,083	+		Sama_1125	0.59	-1.3
1,375,083	+		Sama_1125	0.59	+1.0
1,375,083	+		Sama_1125	0.59	+1.8
1,375,084	-		Sama_1125	0.60	-1.7
1,375,113	+		Sama_1125	0.72	+1.7
1,375,113	+		Sama_1125	0.72	+0.4
1,375,113	+		Sama_1125	0.72	-0.5
1,375,113	+		Sama_1125	0.72	+0.2
1,375,113	+		Sama_1125	0.72	+0.6
1,375,114	-		Sama_1125	0.73	+1.9
1,375,145	-		Sama_1125	0.86	+1.7
1,375,170	+				-1.1
1,375,170	+				-0.7
1,375,171	-				+0.3
1,375,171	-				-1.1
1,375,176	+				-0.0
1,375,176	+				-0.6
1,375,176	+				-1.6
1,375,176	+				+0.2
1,375,177	-				+1.5
1,375,177	-				-2.5
1,375,177	-				-1.6
1,375,208	-				-0.0
1,375,245	+				-1.8
1,375,246	-				-2.6
1,375,270	+				+1.0
1,375,270	+				+0.1
1,375,270	+				-1.3
1,375,270	+				-1.2
1,375,270	+				-1.1
1,375,270	+				+0.4
1,375,270	+				-2.2
1,375,270	+				-0.4
1,375,270	+				-1.6
1,375,270	+				+0.2
1,375,270	+				-0.7
1,375,270	+				-1.8
1,375,270	+				-0.2
1,375,271	-				-0.7
1,375,271	-				-1.0
1,375,271	-				-0.2
1,375,271	-				+0.4
1,375,271	-				+0.2
1,375,271	-				-0.6
1,375,271	-				-0.0
1,375,325	+				+1.0
1,375,326	-				+0.2
1,375,326	-				-0.4
1,375,347	+				+0.4
1,375,347	+				-1.4
1,375,348	-				+1.0
1,375,389	+		Sama_1126	0.12	+4.0
1,375,389	+		Sama_1126	0.12	+1.9
1,375,392	-		Sama_1126	0.13	+1.8
1,375,452	+		Sama_1126	0.22	-2.1
1,375,549	+		Sama_1126	0.37	-0.9
1,375,549	+		Sama_1126	0.37	-1.0
1,375,550	-		Sama_1126	0.37	+0.2
1,375,748	+		Sama_1126	0.68	-2.6
1,375,820	-		Sama_1126	0.79	-0.7
1,375,820	-		Sama_1126	0.79	-0.2
1,375,820	-		Sama_1126	0.79	+0.1
1,375,826	-		Sama_1126	0.80	-0.2
1,375,826	-		Sama_1126	0.80	+1.0
1,375,848	-		Sama_1126	0.84	+0.9
1,375,848	-		Sama_1126	0.84	+0.5
1,375,882	+		Sama_1126	0.89	-0.9
1,375,882	+		Sama_1126	0.89	+2.6
1,375,883	-		Sama_1126	0.89	-1.6
1,375,976	-		Sama_1127	0.11	-0.4
1,375,976	-		Sama_1127	0.11	-1.9
1,375,984	+		Sama_1127	0.13	-0.1
1,376,021	+		Sama_1127	0.25	+1.2
1,376,021	+		Sama_1127	0.25	+0.0
1,376,021	+		Sama_1127	0.25	+0.1
1,376,021	+		Sama_1127	0.25	-0.5
1,376,021	+		Sama_1127	0.25	+0.5
1,376,021	+		Sama_1127	0.25	-0.9
1,376,022	-		Sama_1127	0.25	+0.6
1,376,022	-		Sama_1127	0.25	-0.8
1,376,022	-		Sama_1127	0.25	+0.7
1,376,022	-		Sama_1127	0.25	-1.9
1,376,022	-		Sama_1127	0.25	-0.0
1,376,022	-		Sama_1127	0.25	-0.7
1,376,026	+		Sama_1127	0.27	-1.2
1,376,026	+		Sama_1127	0.27	-1.8
1,376,026	+		Sama_1127	0.27	-1.2
1,376,027	-		Sama_1127	0.27	-1.1
1,376,027	-		Sama_1127	0.27	-1.3
1,376,051	+		Sama_1127	0.35	+0.4
1,376,051	+		Sama_1127	0.35	-2.0
1,376,051	+		Sama_1127	0.35	-0.1
1,376,051	+		Sama_1127	0.35	-0.3
1,376,052	-		Sama_1127	0.35	-2.9
1,376,052	-		Sama_1127	0.35	+2.7
1,376,062	-		Sama_1127	0.38	-0.3
1,376,100	-		Sama_1127	0.50	-1.6
1,376,116	+		Sama_1127	0.55	-0.1
1,376,132	+		Sama_1127	0.60	-0.2