Strain Fitness in Shewanella amazonensis SB2B around Sama_0795

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0794 and Sama_0795 are separated by 76 nucleotidesSama_0795 and Sama_0796 are separated by 222 nucleotides Sama_0794: Sama_0794 - gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data), at 978,676 to 979,479 _0794 Sama_0795: Sama_0795 - leucyl aminopeptidase (RefSeq), at 979,556 to 981,064 _0795 Sama_0796: Sama_0796 - hypothetical protein (RefSeq), at 981,287 to 982,396 _0796 Position (kb) 979 980 981 982Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 978.603 kb on + strandat 978.604 kb on - strandat 978.604 kb on - strandat 978.609 kb on + strandat 978.609 kb on + strandat 978.617 kb on + strandat 978.618 kb on - strandat 978.618 kb on - strandat 978.675 kb on + strandat 978.675 kb on + strandat 978.675 kb on + strandat 978.675 kb on + strandat 978.675 kb on - strandat 978.675 kb on + strandat 978.676 kb on - strandat 978.683 kb on + strandat 978.683 kb on + strandat 978.683 kb on + strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.684 kb on - strandat 978.725 kb on + strandat 978.763 kb on + strand, within Sama_0794at 978.764 kb on - strand, within Sama_0794at 978.784 kb on + strand, within Sama_0794at 978.784 kb on + strand, within Sama_0794at 978.784 kb on + strand, within Sama_0794at 978.784 kb on + strand, within Sama_0794at 978.784 kb on + strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.785 kb on - strand, within Sama_0794at 978.786 kb on + strand, within Sama_0794at 978.786 kb on + strand, within Sama_0794at 978.786 kb on + strand, within Sama_0794at 978.786 kb on + strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.787 kb on - strand, within Sama_0794at 978.824 kb on + strand, within Sama_0794at 978.828 kb on + strand, within Sama_0794at 978.835 kb on - strand, within Sama_0794at 978.855 kb on + strand, within Sama_0794at 978.855 kb on + strand, within Sama_0794at 978.865 kb on + strand, within Sama_0794at 978.865 kb on + strand, within Sama_0794at 978.865 kb on + strand, within Sama_0794at 978.866 kb on - strand, within Sama_0794at 978.887 kb on + strand, within Sama_0794at 978.887 kb on + strand, within Sama_0794at 978.888 kb on - strand, within Sama_0794at 978.888 kb on - strand, within Sama_0794at 978.888 kb on - strand, within Sama_0794at 978.889 kb on + strand, within Sama_0794at 978.889 kb on + strand, within Sama_0794at 978.889 kb on + strand, within Sama_0794at 978.889 kb on + strand, within Sama_0794at 978.889 kb on + strand, within Sama_0794at 978.890 kb on - strand, within Sama_0794at 978.890 kb on - strand, within Sama_0794at 978.928 kb on + strand, within Sama_0794at 978.928 kb on + strand, within Sama_0794at 978.929 kb on - strand, within Sama_0794at 978.987 kb on + strand, within Sama_0794at 978.987 kb on + strand, within Sama_0794at 978.987 kb on + strand, within Sama_0794at 978.988 kb on - strand, within Sama_0794at 978.988 kb on - strand, within Sama_0794at 978.997 kb on - strand, within Sama_0794at 979.084 kb on + strand, within Sama_0794at 979.085 kb on - strand, within Sama_0794at 979.156 kb on + strand, within Sama_0794at 979.156 kb on + strand, within Sama_0794at 979.157 kb on - strand, within Sama_0794at 979.203 kb on + strand, within Sama_0794at 979.203 kb on + strand, within Sama_0794at 979.203 kb on + strand, within Sama_0794at 979.204 kb on - strand, within Sama_0794at 979.204 kb on - strand, within Sama_0794at 979.204 kb on - strand, within Sama_0794at 979.223 kb on + strand, within Sama_0794at 979.223 kb on + strand, within Sama_0794at 979.223 kb on + strand, within Sama_0794at 979.224 kb on - strand, within Sama_0794at 979.224 kb on - strand, within Sama_0794at 979.224 kb on - strand, within Sama_0794at 979.224 kb on - strand, within Sama_0794at 979.230 kb on + strand, within Sama_0794at 979.254 kb on + strand, within Sama_0794at 979.254 kb on + strand, within Sama_0794at 979.255 kb on - strand, within Sama_0794at 979.255 kb on - strand, within Sama_0794at 979.327 kb on + strand, within Sama_0794at 979.328 kb on - strand, within Sama_0794at 979.328 kb on - strand, within Sama_0794at 979.328 kb on - strand, within Sama_0794at 979.328 kb on - strand, within Sama_0794at 979.531 kb on + strandat 979.531 kb on + strandat 979.532 kb on - strandat 979.539 kb on + strandat 979.539 kb on + strandat 979.539 kb on + strandat 979.540 kb on - strandat 979.540 kb on - strandat 979.540 kb on - strandat 979.557 kb on + strandat 979.558 kb on - strandat 979.572 kb on - strandat 979.657 kb on + strandat 979.657 kb on + strandat 979.657 kb on + strandat 979.658 kb on - strandat 979.664 kb on + strandat 979.665 kb on - strandat 979.665 kb on - strandat 979.686 kb on + strandat 979.686 kb on + strandat 979.686 kb on + strandat 979.687 kb on - strandat 979.687 kb on - strandat 979.792 kb on - strand, within Sama_0795at 979.900 kb on + strand, within Sama_0795at 979.901 kb on - strand, within Sama_0795at 979.901 kb on - strand, within Sama_0795at 979.901 kb on - strand, within Sama_0795at 979.974 kb on + strand, within Sama_0795at 979.974 kb on + strand, within Sama_0795at 979.974 kb on + strand, within Sama_0795at 979.974 kb on + strand, within Sama_0795at 979.974 kb on + strand, within Sama_0795at 979.975 kb on - strand, within Sama_0795at 980.050 kb on + strand, within Sama_0795at 980.051 kb on - strand, within Sama_0795at 980.051 kb on - strand, within Sama_0795at 980.073 kb on + strand, within Sama_0795at 980.074 kb on - strand, within Sama_0795at 980.074 kb on - strand, within Sama_0795at 980.074 kb on - strand, within Sama_0795at 980.113 kb on + strand, within Sama_0795at 980.114 kb on - strand, within Sama_0795at 980.114 kb on - strand, within Sama_0795at 980.120 kb on + strand, within Sama_0795at 980.121 kb on - strand, within Sama_0795at 980.121 kb on - strand, within Sama_0795at 980.150 kb on - strand, within Sama_0795at 980.193 kb on + strand, within Sama_0795at 980.193 kb on + strand, within Sama_0795at 980.194 kb on - strand, within Sama_0795at 980.194 kb on - strand, within Sama_0795at 980.233 kb on + strand, within Sama_0795at 980.260 kb on + strand, within Sama_0795at 980.260 kb on + strand, within Sama_0795at 980.261 kb on - strand, within Sama_0795at 980.261 kb on - strand, within Sama_0795at 980.261 kb on - strand, within Sama_0795at 980.265 kb on - strand, within Sama_0795at 980.265 kb on - strand, within Sama_0795at 980.265 kb on - strand, within Sama_0795at 980.307 kb on + strand, within Sama_0795at 980.308 kb on - strand, within Sama_0795at 980.308 kb on - strand, within Sama_0795at 980.308 kb on - strand, within Sama_0795at 980.361 kb on + strand, within Sama_0795at 980.362 kb on - strand, within Sama_0795at 980.363 kb on - strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.404 kb on + strand, within Sama_0795at 980.405 kb on - strand, within Sama_0795at 980.405 kb on - strand, within Sama_0795at 980.405 kb on - strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.408 kb on + strand, within Sama_0795at 980.409 kb on - strand, within Sama_0795at 980.409 kb on - strand, within Sama_0795at 980.409 kb on - strand, within Sama_0795at 980.409 kb on - strand, within Sama_0795at 980.427 kb on - strand, within Sama_0795at 980.427 kb on - strand, within Sama_0795at 980.427 kb on - strand, within Sama_0795at 980.427 kb on - strand, within Sama_0795at 980.470 kb on + strand, within Sama_0795at 980.471 kb on - strand, within Sama_0795at 980.471 kb on - strand, within Sama_0795at 980.479 kb on + strand, within Sama_0795at 980.479 kb on + strand, within Sama_0795at 980.480 kb on - strand, within Sama_0795at 980.578 kb on + strand, within Sama_0795at 980.578 kb on + strand, within Sama_0795at 980.578 kb on + strand, within Sama_0795at 980.579 kb on - strand, within Sama_0795at 980.652 kb on + strand, within Sama_0795at 980.676 kb on - strand, within Sama_0795at 980.697 kb on + strand, within Sama_0795at 980.697 kb on + strand, within Sama_0795at 980.697 kb on + strand, within Sama_0795at 980.698 kb on - strand, within Sama_0795at 980.698 kb on - strand, within Sama_0795at 980.701 kb on + strand, within Sama_0795at 980.702 kb on - strand, within Sama_0795at 980.714 kb on - strand, within Sama_0795at 980.799 kb on + strand, within Sama_0795at 980.799 kb on + strand, within Sama_0795at 980.799 kb on + strand, within Sama_0795at 980.800 kb on - strand, within Sama_0795at 980.939 kb on - strandat 980.939 kb on - strandat 980.939 kb on - strandat 980.939 kb on - strandat 980.939 kb on - strandat 980.940 kb on + strandat 980.940 kb on + strandat 980.940 kb on + strandat 980.940 kb on + strandat 980.941 kb on - strandat 980.941 kb on - strandat 980.941 kb on - strandat 980.997 kb on + strandat 980.997 kb on + strandat 980.998 kb on - strandat 980.998 kb on - strandat 980.998 kb on - strandat 980.999 kb on + strandat 980.999 kb on + strandat 981.000 kb on - strandat 981.000 kb on - strandat 981.000 kb on - strandat 981.000 kb on - strandat 981.051 kb on - strandat 981.055 kb on + strandat 981.055 kb on + strandat 981.074 kb on + strandat 981.075 kb on - strandat 981.075 kb on - strandat 981.082 kb on + strandat 981.083 kb on - strandat 981.098 kb on + strandat 981.098 kb on + strandat 981.109 kb on + strandat 981.138 kb on + strandat 981.138 kb on + strandat 981.229 kb on + strandat 981.229 kb on + strandat 981.229 kb on + strandat 981.240 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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978,603 + +2.7
978,604 - -1.1
978,604 - -1.1
978,609 + -0.0
978,609 + +3.5
978,617 + +0.2
978,618 - +0.3
978,618 - -0.5
978,675 + -1.1
978,675 + -1.3
978,675 + -0.7
978,675 + +2.5
978,675 - +1.0
978,675 + -0.8
978,676 - +0.3
978,683 + -1.0
978,683 + -0.2
978,683 + +1.2
978,684 - -0.9
978,684 - -1.4
978,684 - -1.6
978,684 - +0.7
978,684 - -0.1
978,684 - +1.2
978,684 - -0.4
978,684 - +0.2
978,684 - +0.9
978,684 - +0.2
978,684 - -0.5
978,725 + -0.5
978,763 + Sama_0794 0.11 +0.1
978,764 - Sama_0794 0.11 +2.3
978,784 + Sama_0794 0.13 -0.4
978,784 + Sama_0794 0.13 +0.9
978,784 + Sama_0794 0.13 -1.0
978,784 + Sama_0794 0.13 -0.4
978,784 + Sama_0794 0.13 -1.4
978,785 - Sama_0794 0.14 -0.6
978,785 - Sama_0794 0.14 +0.5
978,785 - Sama_0794 0.14 +0.5
978,785 - Sama_0794 0.14 +2.8
978,785 - Sama_0794 0.14 -0.8
978,785 - Sama_0794 0.14 +0.5
978,785 - Sama_0794 0.14 +0.5
978,785 - Sama_0794 0.14 +2.5
978,785 - Sama_0794 0.14 -0.9
978,785 - Sama_0794 0.14 -0.7
978,786 + Sama_0794 0.14 +1.2
978,786 + Sama_0794 0.14 +0.2
978,786 + Sama_0794 0.14 -0.7
978,786 + Sama_0794 0.14 +1.4
978,787 - Sama_0794 0.14 +0.2
978,787 - Sama_0794 0.14 +0.9
978,787 - Sama_0794 0.14 +4.2
978,787 - Sama_0794 0.14 +0.3
978,787 - Sama_0794 0.14 +0.7
978,787 - Sama_0794 0.14 -1.5
978,824 + Sama_0794 0.18 -2.2
978,828 + Sama_0794 0.19 +0.4
978,835 - Sama_0794 0.20 +1.0
978,855 + Sama_0794 0.22 +1.3
978,855 + Sama_0794 0.22 +1.1
978,865 + Sama_0794 0.24 +0.6
978,865 + Sama_0794 0.24 -0.0
978,865 + Sama_0794 0.24 +0.3
978,866 - Sama_0794 0.24 +0.4
978,887 + Sama_0794 0.26 +0.6
978,887 + Sama_0794 0.26 -2.6
978,888 - Sama_0794 0.26 -0.0
978,888 - Sama_0794 0.26 +2.1
978,888 - Sama_0794 0.26 +1.5
978,889 + Sama_0794 0.26 -0.8
978,889 + Sama_0794 0.26 +0.4
978,889 + Sama_0794 0.26 +0.8
978,889 + Sama_0794 0.26 -0.9
978,889 + Sama_0794 0.26 +3.3
978,890 - Sama_0794 0.27 -0.7
978,890 - Sama_0794 0.27 +0.4
978,928 + Sama_0794 0.31 +0.1
978,928 + Sama_0794 0.31 -0.1
978,929 - Sama_0794 0.31 -1.4
978,987 + Sama_0794 0.39 +0.8
978,987 + Sama_0794 0.39 +1.1
978,987 + Sama_0794 0.39 -1.7
978,988 - Sama_0794 0.39 +1.5
978,988 - Sama_0794 0.39 -0.2
978,997 - Sama_0794 0.40 +3.2
979,084 + Sama_0794 0.51 -0.1
979,085 - Sama_0794 0.51 -1.1
979,156 + Sama_0794 0.60 +0.1
979,156 + Sama_0794 0.60 +0.2
979,157 - Sama_0794 0.60 +0.2
979,203 + Sama_0794 0.66 +2.0
979,203 + Sama_0794 0.66 +2.9
979,203 + Sama_0794 0.66 -0.1
979,204 - Sama_0794 0.66 +1.4
979,204 - Sama_0794 0.66 -1.6
979,204 - Sama_0794 0.66 -0.4
979,223 + Sama_0794 0.68 +0.8
979,223 + Sama_0794 0.68 +2.0
979,223 + Sama_0794 0.68 -0.0
979,224 - Sama_0794 0.68 -1.7
979,224 - Sama_0794 0.68 +1.3
979,224 - Sama_0794 0.68 -0.7
979,224 - Sama_0794 0.68 -0.0
979,230 + Sama_0794 0.69 -0.1
979,254 + Sama_0794 0.72 -1.5
979,254 + Sama_0794 0.72 -0.6
979,255 - Sama_0794 0.72 -1.6
979,255 - Sama_0794 0.72 +1.0
979,327 + Sama_0794 0.81 -1.5
979,328 - Sama_0794 0.81 +0.6
979,328 - Sama_0794 0.81 +0.2
979,328 - Sama_0794 0.81 +0.9
979,328 - Sama_0794 0.81 +0.8
979,531 + -0.5
979,531 + +2.7
979,532 - -1.9
979,539 + -0.4
979,539 + +2.7
979,539 + -2.1
979,540 - -1.3
979,540 - -0.5
979,540 - +0.4
979,557 + -1.2
979,558 - -2.4
979,572 - +0.8
979,657 + -1.1
979,657 + -0.4
979,657 + -2.0
979,658 - -2.2
979,664 + +1.5
979,665 - -2.4
979,665 - -1.8
979,686 + +0.1
979,686 + -0.9
979,686 + -1.6
979,687 - -2.2
979,687 - -1.7
979,792 - Sama_0795 0.16 -0.6
979,900 + Sama_0795 0.23 -0.8
979,901 - Sama_0795 0.23 -2.0
979,901 - Sama_0795 0.23 +0.9
979,901 - Sama_0795 0.23 -0.2
979,974 + Sama_0795 0.28 -1.6
979,974 + Sama_0795 0.28 -0.5
979,974 + Sama_0795 0.28 -0.5
979,974 + Sama_0795 0.28 -1.4
979,974 + Sama_0795 0.28 -1.9
979,975 - Sama_0795 0.28 -2.8
980,050 + Sama_0795 0.33 -1.3
980,051 - Sama_0795 0.33 -1.1
980,051 - Sama_0795 0.33 -2.6
980,073 + Sama_0795 0.34 +0.6
980,074 - Sama_0795 0.34 -1.7
980,074 - Sama_0795 0.34 -2.6
980,074 - Sama_0795 0.34 -0.9
980,113 + Sama_0795 0.37 -0.4
980,114 - Sama_0795 0.37 -2.1
980,114 - Sama_0795 0.37 -2.2
980,120 + Sama_0795 0.37 -0.4
980,121 - Sama_0795 0.37 -1.4
980,121 - Sama_0795 0.37 -0.7
980,150 - Sama_0795 0.39 -1.6
980,193 + Sama_0795 0.42 -1.6
980,193 + Sama_0795 0.42 -2.2
980,194 - Sama_0795 0.42 -1.0
980,194 - Sama_0795 0.42 -0.8
980,233 + Sama_0795 0.45 -2.0
980,260 + Sama_0795 0.47 -1.3
980,260 + Sama_0795 0.47 -1.8
980,261 - Sama_0795 0.47 -1.0
980,261 - Sama_0795 0.47 -2.2
980,261 - Sama_0795 0.47 -0.3
980,265 - Sama_0795 0.47 -1.0
980,265 - Sama_0795 0.47 -2.3
980,265 - Sama_0795 0.47 -1.3
980,307 + Sama_0795 0.50 -2.6
980,308 - Sama_0795 0.50 -1.5
980,308 - Sama_0795 0.50 +1.0
980,308 - Sama_0795 0.50 -2.0
980,361 + Sama_0795 0.53 -2.0
980,362 - Sama_0795 0.53 -0.9
980,363 - Sama_0795 0.53 +0.3
980,404 + Sama_0795 0.56 +0.3
980,404 + Sama_0795 0.56 -2.9
980,404 + Sama_0795 0.56 -0.6
980,404 + Sama_0795 0.56 -3.9
980,404 + Sama_0795 0.56 -1.6
980,404 + Sama_0795 0.56 -0.7
980,404 + Sama_0795 0.56 -1.2
980,404 + Sama_0795 0.56 -0.5
980,404 + Sama_0795 0.56 +0.4
980,405 - Sama_0795 0.56 -1.2
980,405 - Sama_0795 0.56 -1.4
980,405 - Sama_0795 0.56 -2.6
980,408 + Sama_0795 0.56 -2.0
980,408 + Sama_0795 0.56 -1.3
980,408 + Sama_0795 0.56 -0.4
980,408 + Sama_0795 0.56 -2.3
980,408 + Sama_0795 0.56 -2.2
980,408 + Sama_0795 0.56 -0.2
980,408 + Sama_0795 0.56 -0.4
980,408 + Sama_0795 0.56 -0.2
980,408 + Sama_0795 0.56 +0.3
980,408 + Sama_0795 0.56 -1.0
980,409 - Sama_0795 0.57 -2.2
980,409 - Sama_0795 0.57 -0.6
980,409 - Sama_0795 0.57 -0.6
980,409 - Sama_0795 0.57 -0.8
980,427 - Sama_0795 0.58 -0.2
980,427 - Sama_0795 0.58 -0.4
980,427 - Sama_0795 0.58 -1.6
980,427 - Sama_0795 0.58 -2.4
980,470 + Sama_0795 0.61 -2.3
980,471 - Sama_0795 0.61 -0.3
980,471 - Sama_0795 0.61 -1.0
980,479 + Sama_0795 0.61 +2.0
980,479 + Sama_0795 0.61 -1.7
980,480 - Sama_0795 0.61 -1.8
980,578 + Sama_0795 0.68 -2.5
980,578 + Sama_0795 0.68 -2.0
980,578 + Sama_0795 0.68 -1.1
980,579 - Sama_0795 0.68 -0.9
980,652 + Sama_0795 0.73 -2.4
980,676 - Sama_0795 0.74 -1.2
980,697 + Sama_0795 0.76 -2.7
980,697 + Sama_0795 0.76 -1.0
980,697 + Sama_0795 0.76 +1.9
980,698 - Sama_0795 0.76 -1.8
980,698 - Sama_0795 0.76 +1.0
980,701 + Sama_0795 0.76 -0.8
980,702 - Sama_0795 0.76 +3.8
980,714 - Sama_0795 0.77 -2.3
980,799 + Sama_0795 0.82 -1.5
980,799 + Sama_0795 0.82 -3.1
980,799 + Sama_0795 0.82 -1.7
980,800 - Sama_0795 0.82 -1.2
980,939 - -1.2
980,939 - -0.6
980,939 - -0.5
980,939 - +0.6
980,939 - -2.7
980,940 + -2.6
980,940 + -1.8
980,940 + +0.3
980,940 + -2.0
980,941 - +0.7
980,941 - -0.4
980,941 - -0.9
980,997 + -1.4
980,997 + -1.3
980,998 - -0.9
980,998 - -0.6
980,998 - -2.5
980,999 + -0.4
980,999 + -1.3
981,000 - -3.2
981,000 - +0.8
981,000 - -1.4
981,000 - -0.6
981,051 - -1.6
981,055 + -0.7
981,055 + -0.0
981,074 + -0.9
981,075 - -1.3
981,075 - -3.1
981,082 + -1.1
981,083 - -0.2
981,098 + -0.6
981,098 + -2.5
981,109 + -2.2
981,138 + -0.0
981,138 + +0.2
981,229 + -2.6
981,229 + -2.8
981,229 + +1.0
981,240 + -0.9

Or see this region's nucleotide sequence