Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2870

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2868 and Dshi_2869 are separated by 9 nucleotidesDshi_2869 and Dshi_2870 are separated by 74 nucleotidesDshi_2870 and Dshi_2871 are separated by 36 nucleotides Dshi_2868: Dshi_2868 - cytochrome c class II (RefSeq), at 3,024,581 to 3,025,060 _2868 Dshi_2869: Dshi_2869 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 3,025,070 to 3,025,948 _2869 Dshi_2870: Dshi_2870 - hypothetical protein (RefSeq), at 3,026,023 to 3,026,229 _2870 Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297 _2871 Position (kb) 3026 3027Strain fitness (log2 ratio) -2 -1 0 1at 3025.099 kb on + strandat 3025.149 kb on - strandat 3025.215 kb on - strand, within Dshi_2869at 3025.270 kb on + strand, within Dshi_2869at 3025.283 kb on + strand, within Dshi_2869at 3025.353 kb on - strand, within Dshi_2869at 3025.370 kb on - strand, within Dshi_2869at 3025.393 kb on + strand, within Dshi_2869at 3025.443 kb on - strand, within Dshi_2869at 3025.543 kb on - strand, within Dshi_2869at 3025.564 kb on - strand, within Dshi_2869at 3025.574 kb on - strand, within Dshi_2869at 3025.574 kb on - strand, within Dshi_2869at 3025.619 kb on - strand, within Dshi_2869at 3025.649 kb on + strand, within Dshi_2869at 3025.669 kb on + strand, within Dshi_2869at 3025.767 kb on + strand, within Dshi_2869at 3025.814 kb on - strand, within Dshi_2869at 3025.908 kb on - strandat 3025.920 kb on + strandat 3025.952 kb on - strandat 3026.025 kb on + strandat 3026.144 kb on - strand, within Dshi_2870at 3026.165 kb on + strand, within Dshi_2870at 3026.427 kb on + strand, within Dshi_2871at 3026.435 kb on - strand, within Dshi_2871at 3026.558 kb on - strand, within Dshi_2871at 3026.565 kb on + strand, within Dshi_2871at 3026.592 kb on + strand, within Dshi_2871at 3026.700 kb on + strand, within Dshi_2871at 3026.741 kb on + strand, within Dshi_2871at 3026.867 kb on - strand, within Dshi_2871at 3026.886 kb on - strand, within Dshi_2871at 3027.032 kb on - strand, within Dshi_2871at 3027.041 kb on - strand, within Dshi_2871at 3027.131 kb on + strand, within Dshi_2871at 3027.131 kb on + strand, within Dshi_2871at 3027.188 kb on + strand, within Dshi_2871at 3027.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,025,099 + +0.2
3,025,149 - -0.5
3,025,215 - Dshi_2869 0.16 +0.5
3,025,270 + Dshi_2869 0.23 -0.4
3,025,283 + Dshi_2869 0.24 +0.3
3,025,353 - Dshi_2869 0.32 +0.2
3,025,370 - Dshi_2869 0.34 -0.6
3,025,393 + Dshi_2869 0.37 +0.0
3,025,443 - Dshi_2869 0.42 -0.5
3,025,543 - Dshi_2869 0.54 -0.5
3,025,564 - Dshi_2869 0.56 -1.0
3,025,574 - Dshi_2869 0.57 +0.0
3,025,574 - Dshi_2869 0.57 -0.8
3,025,619 - Dshi_2869 0.62 -0.0
3,025,649 + Dshi_2869 0.66 -0.1
3,025,669 + Dshi_2869 0.68 -0.4
3,025,767 + Dshi_2869 0.79 -0.9
3,025,814 - Dshi_2869 0.85 -0.1
3,025,908 - -0.5
3,025,920 + -0.2
3,025,952 - -0.0
3,026,025 + -0.4
3,026,144 - Dshi_2870 0.58 -1.1
3,026,165 + Dshi_2870 0.69 -1.6
3,026,427 + Dshi_2871 0.16 +0.1
3,026,435 - Dshi_2871 0.16 -0.6
3,026,558 - Dshi_2871 0.28 -0.4
3,026,565 + Dshi_2871 0.29 +0.0
3,026,592 + Dshi_2871 0.32 -1.0
3,026,700 + Dshi_2871 0.42 -1.2
3,026,741 + Dshi_2871 0.46 -0.3
3,026,867 - Dshi_2871 0.58 -1.8
3,026,886 - Dshi_2871 0.60 +0.1
3,027,032 - Dshi_2871 0.74 -0.1
3,027,041 - Dshi_2871 0.75 -0.5
3,027,131 + Dshi_2871 0.84 -0.2
3,027,131 + Dshi_2871 0.84 +0.6
3,027,188 + Dshi_2871 0.89 -0.8
3,027,211 + +0.5

Or see this region's nucleotide sequence