Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1769

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1767 and Dshi_1768 are separated by 181 nucleotidesDshi_1768 and Dshi_1769 are separated by 11 nucleotidesDshi_1769 and Dshi_1770 are separated by 126 nucleotidesDshi_1770 and Dshi_1771 are separated by 135 nucleotides Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865 _1767 Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688 _1768 Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505 _1769 Dshi_1770: Dshi_1770 - hypothetical protein (RefSeq), at 1,837,632 to 1,837,898 _1770 Dshi_1771: Dshi_1771 - hypothetical protein (RefSeq), at 1,838,034 to 1,839,236 _1771 Position (kb) 1835 1836 1837 1838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1834.847 kb on - strandat 1834.947 kb on - strandat 1834.947 kb on - strandat 1834.963 kb on + strandat 1834.995 kb on + strandat 1835.037 kb on - strandat 1835.585 kb on + strand, within Dshi_1768at 1836.070 kb on + strand, within Dshi_1769at 1836.147 kb on - strand, within Dshi_1769at 1836.172 kb on + strand, within Dshi_1769at 1836.265 kb on - strand, within Dshi_1769at 1836.265 kb on - strand, within Dshi_1769at 1836.436 kb on + strand, within Dshi_1769at 1836.490 kb on + strand, within Dshi_1769at 1836.749 kb on - strand, within Dshi_1769at 1836.878 kb on + strand, within Dshi_1769at 1837.162 kb on - strand, within Dshi_1769at 1837.364 kb on - strandat 1837.437 kb on - strandat 1837.595 kb on - strandat 1837.606 kb on - strandat 1837.618 kb on + strandat 1837.626 kb on - strandat 1837.690 kb on + strand, within Dshi_1770at 1837.758 kb on - strand, within Dshi_1770at 1837.795 kb on + strand, within Dshi_1770at 1837.886 kb on - strandat 1837.946 kb on - strandat 1838.073 kb on + strandat 1838.322 kb on - strand, within Dshi_1771at 1838.403 kb on - strand, within Dshi_1771at 1838.432 kb on - strand, within Dshi_1771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,834,847 - -0.2
1,834,947 - -2.3
1,834,947 - -0.3
1,834,963 + +0.3
1,834,995 + +1.1
1,835,037 - +1.2
1,835,585 + Dshi_1768 0.84 -2.0
1,836,070 + Dshi_1769 0.20 +0.1
1,836,147 - Dshi_1769 0.25 -3.2
1,836,172 + Dshi_1769 0.26 -3.5
1,836,265 - Dshi_1769 0.31 -1.6
1,836,265 - Dshi_1769 0.31 -2.8
1,836,436 + Dshi_1769 0.41 -2.6
1,836,490 + Dshi_1769 0.44 -1.9
1,836,749 - Dshi_1769 0.58 -4.2
1,836,878 + Dshi_1769 0.65 -1.7
1,837,162 - Dshi_1769 0.81 -2.9
1,837,364 - -1.9
1,837,437 - -2.4
1,837,595 - -0.2
1,837,606 - -0.1
1,837,618 + -0.1
1,837,626 - +0.3
1,837,690 + Dshi_1770 0.22 -0.6
1,837,758 - Dshi_1770 0.47 +0.2
1,837,795 + Dshi_1770 0.61 -0.2
1,837,886 - -0.5
1,837,946 - -0.4
1,838,073 + -0.7
1,838,322 - Dshi_1771 0.24 +0.6
1,838,403 - Dshi_1771 0.31 +0.1
1,838,432 - Dshi_1771 0.33 -0.0

Or see this region's nucleotide sequence