Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09710 and PGA1_c09720 are separated by 28 nucleotides PGA1_c09720 and PGA1_c09730 are separated by 113 nucleotides
PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193
_c09710
PGA1_c09720: PGA1_c09720 - DNA repair protein RecN, at 998,222 to 999,868
_c09720
PGA1_c09730: PGA1_c09730 - putative voltage-gated CIC-type chloride channel, at 999,982 to 1,001,673
_c09730
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 998.093 kb on + strand, within PGA1_c09710 at 998.093 kb on + strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.187 kb on - strand at 998.232 kb on + strand at 998.257 kb on - strand at 998.296 kb on - strand at 998.394 kb on + strand, within PGA1_c09720 at 998.456 kb on + strand, within PGA1_c09720 at 998.556 kb on + strand, within PGA1_c09720 at 998.643 kb on + strand, within PGA1_c09720 at 998.677 kb on + strand, within PGA1_c09720 at 998.897 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.950 kb on - strand, within PGA1_c09720 at 998.964 kb on + strand, within PGA1_c09720 at 999.030 kb on - strand, within PGA1_c09720 at 999.096 kb on - strand, within PGA1_c09720 at 999.342 kb on + strand, within PGA1_c09720 at 999.419 kb on + strand, within PGA1_c09720 at 999.427 kb on + strand, within PGA1_c09720 at 999.509 kb on + strand, within PGA1_c09720 at 999.760 kb on + strand at 999.765 kb on + strand at 999.765 kb on + strand at 999.773 kb on - strand at 999.810 kb on - strand at 999.825 kb on + strand at 999.825 kb on + strand at 999.833 kb on - strand at 999.833 kb on - strand at 999.957 kb on + strand at 1000.034 kb on - strand at 1000.095 kb on + strand at 1000.148 kb on - strand at 1000.211 kb on + strand, within PGA1_c09730 at 1000.229 kb on - strand, within PGA1_c09730 at 1000.229 kb on - strand, within PGA1_c09730 at 1000.234 kb on - strand, within PGA1_c09730 at 1000.236 kb on - strand, within PGA1_c09730 at 1000.290 kb on - strand, within PGA1_c09730 at 1000.301 kb on - strand, within PGA1_c09730 at 1000.379 kb on + strand, within PGA1_c09730 at 1000.421 kb on - strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.522 kb on + strand, within PGA1_c09730 at 1000.522 kb on - strand, within PGA1_c09730 at 1000.530 kb on - strand, within PGA1_c09730 at 1000.629 kb on - strand, within PGA1_c09730 at 1000.629 kb on - strand, within PGA1_c09730 at 1000.708 kb on - strand, within PGA1_c09730 at 1000.726 kb on + strand, within PGA1_c09730 at 1000.754 kb on + strand, within PGA1_c09730 at 1000.787 kb on + strand, within PGA1_c09730 at 1000.792 kb on + strand, within PGA1_c09730 at 1000.800 kb on - strand, within PGA1_c09730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 998,093 + PGA1_c09710 0.88 -2.6 998,093 + PGA1_c09710 0.88 -3.2 998,101 - PGA1_c09710 0.89 -2.0 998,101 - PGA1_c09710 0.89 -0.5 998,187 - -1.7 998,232 + +1.0 998,257 - +0.1 998,296 - -0.7 998,394 + PGA1_c09720 0.10 -0.6 998,456 + PGA1_c09720 0.14 -1.5 998,556 + PGA1_c09720 0.20 -0.4 998,643 + PGA1_c09720 0.26 -2.2 998,677 + PGA1_c09720 0.28 -1.7 998,897 + PGA1_c09720 0.41 -2.0 998,942 + PGA1_c09720 0.44 -1.1 998,942 + PGA1_c09720 0.44 -0.3 998,950 - PGA1_c09720 0.44 -0.7 998,964 + PGA1_c09720 0.45 -3.3 999,030 - PGA1_c09720 0.49 -0.6 999,096 - PGA1_c09720 0.53 -1.9 999,342 + PGA1_c09720 0.68 +1.4 999,419 + PGA1_c09720 0.73 -1.3 999,427 + PGA1_c09720 0.73 -0.0 999,509 + PGA1_c09720 0.78 +0.6 999,760 + -0.7 999,765 + +0.2 999,765 + +0.3 999,773 - +0.4 999,810 - +0.2 999,825 + +0.7 999,825 + -1.8 999,833 - +0.5 999,833 - -0.0 999,957 + -0.8 1,000,034 - +1.2 1,000,095 + -2.8 1,000,148 - -0.7 1,000,211 + PGA1_c09730 0.14 -1.3 1,000,229 - PGA1_c09730 0.15 -0.5 1,000,229 - PGA1_c09730 0.15 -1.3 1,000,234 - PGA1_c09730 0.15 -1.9 1,000,236 - PGA1_c09730 0.15 -3.5 1,000,290 - PGA1_c09730 0.18 -1.6 1,000,301 - PGA1_c09730 0.19 +0.6 1,000,379 + PGA1_c09730 0.23 -0.6 1,000,421 - PGA1_c09730 0.26 -1.0 1,000,424 + PGA1_c09730 0.26 -0.9 1,000,424 + PGA1_c09730 0.26 -0.7 1,000,424 + PGA1_c09730 0.26 -0.0 1,000,424 + PGA1_c09730 0.26 -0.2 1,000,522 + PGA1_c09730 0.32 -0.9 1,000,522 - PGA1_c09730 0.32 -1.8 1,000,530 - PGA1_c09730 0.32 -1.8 1,000,629 - PGA1_c09730 0.38 -0.4 1,000,629 - PGA1_c09730 0.38 -0.7 1,000,708 - PGA1_c09730 0.43 -0.9 1,000,726 + PGA1_c09730 0.44 -1.1 1,000,754 + PGA1_c09730 0.46 -0.5 1,000,787 + PGA1_c09730 0.48 -1.8 1,000,792 + PGA1_c09730 0.48 +0.7 1,000,800 - PGA1_c09730 0.48 -0.7
Or see this region's nucleotide sequence