Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08030

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08020 and PGA1_c08030 are separated by 52 nucleotidesPGA1_c08030 and PGA1_c08040 are separated by 330 nucleotidesPGA1_c08040 and PGA1_c08050 are separated by 75 nucleotides PGA1_c08020: PGA1_c08020 - D-alanyl-D-alanine carboxypeptidase DacC, at 831,701 to 832,891 _c08020 PGA1_c08030: PGA1_c08030 - Sporulation related domain., at 832,944 to 833,873 _c08030 PGA1_c08040: PGA1_c08040 - tRNA-Ser, at 834,204 to 834,293 _c08040 PGA1_c08050: PGA1_c08050 - putative precorrin-6A synthase (deacetylating), cobF, at 834,369 to 835,136 _c08050 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1at 833.910 kb on - strandat 833.926 kb on + strandat 833.926 kb on + strandat 833.934 kb on - strandat 833.986 kb on + strandat 833.988 kb on + strandat 833.994 kb on - strandat 833.994 kb on - strandat 834.123 kb on + strandat 834.163 kb on - strandat 834.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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833,910 - -1.6
833,926 + +1.0
833,926 + +0.5
833,934 - -1.4
833,986 + +1.5
833,988 + -2.2
833,994 - -0.2
833,994 - -1.0
834,123 + -0.9
834,163 - -2.5
834,317 - -3.2

Or see this region's nucleotide sequence