Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07710

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07690 and PGA1_c07700 overlap by 1 nucleotidesPGA1_c07700 and PGA1_c07710 overlap by 4 nucleotidesPGA1_c07710 and PGA1_c07720 are separated by 37 nucleotidesPGA1_c07720 and PGA1_c07730 are separated by 28 nucleotides PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556 _c07690 PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110 _c07700 PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613 _c07710 PGA1_c07720: PGA1_c07720 - universal stress protein, at 799,651 to 800,061 _c07720 PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070 _c07730 Position (kb) 799 800Strain fitness (log2 ratio) -2 -1 0 1 2 3at 798.138 kb on - strand, within PGA1_c07690at 798.148 kb on + strand, within PGA1_c07690at 798.182 kb on + strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.190 kb on - strand, within PGA1_c07690at 798.305 kb on + strand, within PGA1_c07690at 798.364 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.427 kb on - strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.440 kb on - strand, within PGA1_c07690at 798.450 kb on - strandat 798.452 kb on - strandat 798.495 kb on - strandat 798.497 kb on - strandat 798.562 kb on + strandat 798.567 kb on - strandat 798.659 kb on - strand, within PGA1_c07700at 798.703 kb on - strand, within PGA1_c07700at 798.738 kb on - strand, within PGA1_c07700at 798.782 kb on - strand, within PGA1_c07700at 798.786 kb on - strand, within PGA1_c07700at 798.842 kb on - strand, within PGA1_c07700at 798.886 kb on + strand, within PGA1_c07700at 798.891 kb on + strand, within PGA1_c07700at 798.946 kb on + strand, within PGA1_c07700at 798.958 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.031 kb on - strand, within PGA1_c07700at 799.064 kb on - strandat 799.066 kb on + strandat 799.151 kb on - strandat 799.159 kb on + strand, within PGA1_c07710at 799.376 kb on + strand, within PGA1_c07710at 799.455 kb on + strand, within PGA1_c07710at 799.468 kb on + strand, within PGA1_c07710at 799.643 kb on + strandat 799.658 kb on - strandat 799.666 kb on + strandat 799.674 kb on - strandat 799.701 kb on - strand, within PGA1_c07720at 799.759 kb on + strand, within PGA1_c07720at 799.765 kb on + strand, within PGA1_c07720at 799.773 kb on - strand, within PGA1_c07720at 799.774 kb on + strand, within PGA1_c07720at 799.787 kb on - strand, within PGA1_c07720at 799.787 kb on - strand, within PGA1_c07720at 799.903 kb on + strand, within PGA1_c07720at 799.938 kb on - strand, within PGA1_c07720at 799.938 kb on - strand, within PGA1_c07720at 800.009 kb on + strand, within PGA1_c07720at 800.012 kb on - strand, within PGA1_c07720at 800.017 kb on - strand, within PGA1_c07720at 800.076 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.090 kb on - strandat 800.096 kb on - strandat 800.143 kb on - strandat 800.190 kb on - strand, within PGA1_c07730at 800.193 kb on - strand, within PGA1_c07730at 800.257 kb on + strand, within PGA1_c07730at 800.258 kb on + strand, within PGA1_c07730at 800.265 kb on - strand, within PGA1_c07730at 800.313 kb on - strand, within PGA1_c07730at 800.313 kb on - strand, within PGA1_c07730at 800.339 kb on - strand, within PGA1_c07730at 800.490 kb on + strand, within PGA1_c07730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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798,138 - PGA1_c07690 0.62 -0.1
798,148 + PGA1_c07690 0.63 -2.4
798,182 + PGA1_c07690 0.66 -0.0
798,184 - PGA1_c07690 0.66 +0.7
798,184 - PGA1_c07690 0.66 -0.4
798,190 - PGA1_c07690 0.66 -0.6
798,305 + PGA1_c07690 0.77 -0.9
798,364 + PGA1_c07690 0.82 +1.0
798,419 + PGA1_c07690 0.87 +1.6
798,419 + PGA1_c07690 0.87 +0.6
798,427 - PGA1_c07690 0.88 +1.6
798,434 + PGA1_c07690 0.89 -0.9
798,434 + PGA1_c07690 0.89 -0.6
798,440 - PGA1_c07690 0.89 -0.3
798,450 - -0.0
798,452 - +0.8
798,495 - -2.4
798,497 - +0.1
798,562 + -0.6
798,567 - -0.2
798,659 - PGA1_c07700 0.19 -0.3
798,703 - PGA1_c07700 0.26 +0.6
798,738 - PGA1_c07700 0.33 +1.0
798,782 - PGA1_c07700 0.41 +1.4
798,786 - PGA1_c07700 0.41 +0.2
798,842 - PGA1_c07700 0.52 +1.0
798,886 + PGA1_c07700 0.59 +0.4
798,891 + PGA1_c07700 0.60 +1.0
798,946 + PGA1_c07700 0.70 -1.4
798,958 + PGA1_c07700 0.72 -1.9
799,023 + PGA1_c07700 0.84 +0.2
799,023 + PGA1_c07700 0.84 +0.4
799,023 + PGA1_c07700 0.84 -1.9
799,023 + PGA1_c07700 0.84 -1.6
799,031 - PGA1_c07700 0.86 -0.6
799,064 - -0.0
799,066 + +0.6
799,151 - -0.2
799,159 + PGA1_c07710 0.10 -1.4
799,376 + PGA1_c07710 0.53 -1.4
799,455 + PGA1_c07710 0.69 +2.0
799,468 + PGA1_c07710 0.71 -0.6
799,643 + -2.6
799,658 - +1.3
799,666 + +1.4
799,674 - +2.0
799,701 - PGA1_c07720 0.12 +1.0
799,759 + PGA1_c07720 0.26 -1.4
799,765 + PGA1_c07720 0.28 -1.4
799,773 - PGA1_c07720 0.30 +0.5
799,774 + PGA1_c07720 0.30 +1.0
799,787 - PGA1_c07720 0.33 +0.6
799,787 - PGA1_c07720 0.33 +0.1
799,903 + PGA1_c07720 0.61 -0.5
799,938 - PGA1_c07720 0.70 -1.4
799,938 - PGA1_c07720 0.70 -1.9
800,009 + PGA1_c07720 0.87 -0.6
800,012 - PGA1_c07720 0.88 -0.4
800,017 - PGA1_c07720 0.89 +0.5
800,076 + -1.6
800,081 + +1.0
800,081 + +1.5
800,081 + -0.0
800,081 + -0.6
800,081 + +1.0
800,081 + -1.9
800,081 + -1.0
800,081 + -0.0
800,081 + +0.2
800,089 - -1.6
800,089 - -0.0
800,089 - -1.9
800,089 - -0.4
800,090 - -0.6
800,096 - -0.0
800,143 - +0.7
800,190 - PGA1_c07730 0.10 +1.0
800,193 - PGA1_c07730 0.10 +3.1
800,257 + PGA1_c07730 0.17 -1.4
800,258 + PGA1_c07730 0.17 +3.0
800,265 - PGA1_c07730 0.18 +0.2
800,313 - PGA1_c07730 0.23 -0.7
800,313 - PGA1_c07730 0.23 +1.0
800,339 - PGA1_c07730 0.25 +0.5
800,490 + PGA1_c07730 0.41 -0.0

Or see this region's nucleotide sequence