Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07220 and PGA1_c07230 overlap by 4 nucleotides PGA1_c07230 and PGA1_c07240 are separated by 12 nucleotides PGA1_c07240 and PGA1_c07250 overlap by 1 nucleotides
PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data) , at 742,583 to 743,422
_c07220
PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) , at 743,419 to 744,276
_c07230
PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data) , at 744,289 to 745,281
_c07240
PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) , at 745,281 to 747,155
_c07250
Position (kb)
744
745
746 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 743.340 kb on - strand at 743.373 kb on + strand at 743.467 kb on - strand at 743.511 kb on + strand, within PGA1_c07230 at 743.512 kb on + strand, within PGA1_c07230 at 743.519 kb on - strand, within PGA1_c07230 at 743.564 kb on + strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.614 kb on - strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.666 kb on - strand, within PGA1_c07230 at 743.780 kb on + strand, within PGA1_c07230 at 743.795 kb on + strand, within PGA1_c07230 at 743.805 kb on + strand, within PGA1_c07230 at 743.876 kb on + strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.886 kb on + strand, within PGA1_c07230 at 743.894 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.936 kb on - strand, within PGA1_c07230 at 744.035 kb on + strand, within PGA1_c07230 at 744.078 kb on + strand, within PGA1_c07230 at 744.083 kb on + strand, within PGA1_c07230 at 744.088 kb on + strand, within PGA1_c07230 at 744.096 kb on - strand, within PGA1_c07230 at 744.134 kb on + strand, within PGA1_c07230 at 744.139 kb on + strand, within PGA1_c07230 at 744.162 kb on + strand, within PGA1_c07230 at 744.170 kb on - strand, within PGA1_c07230 at 744.177 kb on - strand, within PGA1_c07230 at 744.184 kb on - strand, within PGA1_c07230 at 744.186 kb on + strand, within PGA1_c07230 at 744.194 kb on - strand at 744.310 kb on - strand at 744.352 kb on + strand at 744.376 kb on - strand at 744.442 kb on - strand, within PGA1_c07240 at 744.571 kb on + strand, within PGA1_c07240 at 744.627 kb on - strand, within PGA1_c07240 at 744.723 kb on - strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.740 kb on + strand, within PGA1_c07240 at 744.741 kb on - strand, within PGA1_c07240 at 744.789 kb on + strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.827 kb on + strand, within PGA1_c07240 at 744.853 kb on - strand, within PGA1_c07240 at 744.862 kb on + strand, within PGA1_c07240 at 744.870 kb on - strand, within PGA1_c07240 at 744.889 kb on - strand, within PGA1_c07240 at 744.944 kb on - strand, within PGA1_c07240 at 744.969 kb on + strand, within PGA1_c07240 at 745.017 kb on + strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.051 kb on + strand, within PGA1_c07240 at 745.079 kb on + strand, within PGA1_c07240 at 745.089 kb on + strand, within PGA1_c07240 at 745.206 kb on + strand at 745.206 kb on + strand at 745.206 kb on + strand at 745.214 kb on - strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.288 kb on + strand at 745.296 kb on - strand at 745.383 kb on + strand at 745.398 kb on + strand at 745.406 kb on - strand at 745.462 kb on + strand at 745.470 kb on - strand, within PGA1_c07250 at 745.501 kb on + strand, within PGA1_c07250 at 745.509 kb on - strand, within PGA1_c07250 at 745.514 kb on + strand, within PGA1_c07250 at 745.518 kb on + strand, within PGA1_c07250 at 745.526 kb on - strand, within PGA1_c07250 at 745.564 kb on - strand, within PGA1_c07250 at 745.573 kb on - strand, within PGA1_c07250 at 745.617 kb on - strand, within PGA1_c07250 at 745.634 kb on + strand, within PGA1_c07250 at 745.696 kb on - strand, within PGA1_c07250 at 745.740 kb on + strand, within PGA1_c07250 at 745.765 kb on + strand, within PGA1_c07250 at 745.767 kb on - strand, within PGA1_c07250 at 745.792 kb on - strand, within PGA1_c07250 at 745.861 kb on - strand, within PGA1_c07250 at 745.907 kb on + strand, within PGA1_c07250 at 745.917 kb on + strand, within PGA1_c07250 at 745.958 kb on + strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 746.003 kb on + strand, within PGA1_c07250 at 746.047 kb on + strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.083 kb on + strand, within PGA1_c07250 at 746.151 kb on + strand, within PGA1_c07250 at 746.189 kb on + strand, within PGA1_c07250
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 743,340 - +0.8 743,373 + -3.0 743,467 - +0.2 743,511 + PGA1_c07230 0.11 -0.0 743,512 + PGA1_c07230 0.11 -0.6 743,519 - PGA1_c07230 0.12 -0.1 743,564 + PGA1_c07230 0.17 +0.1 743,572 - PGA1_c07230 0.18 -2.9 743,572 - PGA1_c07230 0.18 +0.7 743,614 - PGA1_c07230 0.23 -0.4 743,630 + PGA1_c07230 0.25 -1.7 743,630 + PGA1_c07230 0.25 +0.3 743,666 - PGA1_c07230 0.29 +0.9 743,780 + PGA1_c07230 0.42 -0.3 743,795 + PGA1_c07230 0.44 +0.6 743,805 + PGA1_c07230 0.45 +1.3 743,876 + PGA1_c07230 0.53 +0.6 743,884 - PGA1_c07230 0.54 -1.1 743,884 - PGA1_c07230 0.54 +1.1 743,886 + PGA1_c07230 0.54 -0.7 743,894 - PGA1_c07230 0.55 -0.9 743,904 - PGA1_c07230 0.57 +0.9 743,904 - PGA1_c07230 0.57 +0.8 743,904 - PGA1_c07230 0.57 -0.1 743,904 - PGA1_c07230 0.57 +0.5 743,904 - PGA1_c07230 0.57 -0.6 743,936 - PGA1_c07230 0.60 -1.0 744,035 + PGA1_c07230 0.72 +1.0 744,078 + PGA1_c07230 0.77 -0.7 744,083 + PGA1_c07230 0.77 +1.4 744,088 + PGA1_c07230 0.78 +1.2 744,096 - PGA1_c07230 0.79 -2.0 744,134 + PGA1_c07230 0.83 -0.1 744,139 + PGA1_c07230 0.84 -0.2 744,162 + PGA1_c07230 0.87 +0.1 744,170 - PGA1_c07230 0.88 -1.6 744,177 - PGA1_c07230 0.88 +1.1 744,184 - PGA1_c07230 0.89 +1.0 744,186 + PGA1_c07230 0.89 +1.0 744,194 - +0.0 744,310 - +0.5 744,352 + +0.4 744,376 - +0.5 744,442 - PGA1_c07240 0.15 -1.6 744,571 + PGA1_c07240 0.28 -0.3 744,627 - PGA1_c07240 0.34 -1.2 744,723 - PGA1_c07240 0.44 +0.6 744,733 + PGA1_c07240 0.45 +0.1 744,733 + PGA1_c07240 0.45 +0.1 744,740 + PGA1_c07240 0.45 +2.6 744,741 - PGA1_c07240 0.46 -2.1 744,789 + PGA1_c07240 0.50 -1.5 744,792 - PGA1_c07240 0.51 +0.5 744,792 - PGA1_c07240 0.51 +1.0 744,827 + PGA1_c07240 0.54 -0.0 744,853 - PGA1_c07240 0.57 +0.2 744,862 + PGA1_c07240 0.58 +0.4 744,870 - PGA1_c07240 0.59 -0.0 744,889 - PGA1_c07240 0.60 +1.4 744,944 - PGA1_c07240 0.66 +1.2 744,969 + PGA1_c07240 0.68 +1.3 745,017 + PGA1_c07240 0.73 +1.6 745,049 - PGA1_c07240 0.77 +0.1 745,049 - PGA1_c07240 0.77 -0.6 745,051 + PGA1_c07240 0.77 +0.4 745,079 + PGA1_c07240 0.80 -0.2 745,089 + PGA1_c07240 0.81 +0.5 745,206 + +0.5 745,206 + -0.4 745,206 + +1.2 745,214 - +0.4 745,251 + +0.3 745,251 + -1.1 745,251 + -1.6 745,251 + +1.1 745,251 + -1.2 745,259 - +0.8 745,259 - -0.4 745,259 - +1.0 745,288 + +0.3 745,296 - +0.4 745,383 + +0.1 745,398 + -0.3 745,406 - -0.7 745,462 + +0.6 745,470 - PGA1_c07250 0.10 +0.2 745,501 + PGA1_c07250 0.12 +0.2 745,509 - PGA1_c07250 0.12 +0.6 745,514 + PGA1_c07250 0.12 +0.0 745,518 + PGA1_c07250 0.13 -0.7 745,526 - PGA1_c07250 0.13 -0.9 745,564 - PGA1_c07250 0.15 +0.5 745,573 - PGA1_c07250 0.16 +1.6 745,617 - PGA1_c07250 0.18 +0.6 745,634 + PGA1_c07250 0.19 +1.2 745,696 - PGA1_c07250 0.22 +0.5 745,740 + PGA1_c07250 0.24 +0.7 745,765 + PGA1_c07250 0.26 +1.5 745,767 - PGA1_c07250 0.26 +1.3 745,792 - PGA1_c07250 0.27 -1.6 745,861 - PGA1_c07250 0.31 +0.8 745,907 + PGA1_c07250 0.33 +0.5 745,917 + PGA1_c07250 0.34 +0.6 745,958 + PGA1_c07250 0.36 +0.5 745,966 - PGA1_c07250 0.37 -0.1 745,966 - PGA1_c07250 0.37 +0.9 746,003 + PGA1_c07250 0.39 +0.1 746,047 + PGA1_c07250 0.41 -0.1 746,072 - PGA1_c07250 0.42 -0.5 746,072 - PGA1_c07250 0.42 +1.1 746,083 + PGA1_c07250 0.43 +1.1 746,151 + PGA1_c07250 0.46 -0.0 746,189 + PGA1_c07250 0.48 +1.6
Or see this region's nucleotide sequence