Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06100

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06080 and PGA1_c06090 are separated by 3 nucleotidesPGA1_c06090 and PGA1_c06100 are separated by 10 nucleotidesPGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847 _c06090 PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826 _c06100 PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271 _c06110 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.895 kb on - strandat 622.900 kb on - strandat 622.905 kb on - strandat 622.918 kb on - strandat 622.941 kb on + strandat 622.949 kb on - strandat 623.007 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.128 kb on - strand, within PGA1_c06090at 623.153 kb on + strand, within PGA1_c06090at 623.222 kb on - strand, within PGA1_c06090at 623.244 kb on - strand, within PGA1_c06090at 623.256 kb on + strand, within PGA1_c06090at 623.292 kb on - strand, within PGA1_c06090at 623.374 kb on + strand, within PGA1_c06090at 623.381 kb on - strand, within PGA1_c06090at 623.425 kb on + strand, within PGA1_c06090at 623.456 kb on + strand, within PGA1_c06090at 623.464 kb on - strand, within PGA1_c06090at 623.466 kb on + strand, within PGA1_c06090at 623.474 kb on - strand, within PGA1_c06090at 623.487 kb on + strand, within PGA1_c06090at 623.502 kb on + strand, within PGA1_c06090at 623.567 kb on + strand, within PGA1_c06090at 623.575 kb on - strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.577 kb on + strand, within PGA1_c06090at 623.640 kb on - strand, within PGA1_c06090at 623.668 kb on + strand, within PGA1_c06090at 623.671 kb on - strand, within PGA1_c06090at 623.676 kb on - strand, within PGA1_c06090at 623.724 kb on + strand, within PGA1_c06090at 623.798 kb on + strandat 623.808 kb on - strandat 623.904 kb on - strandat 623.940 kb on + strandat 624.031 kb on + strand, within PGA1_c06100at 624.054 kb on + strand, within PGA1_c06100at 624.079 kb on + strand, within PGA1_c06100at 624.099 kb on + strand, within PGA1_c06100at 624.121 kb on + strand, within PGA1_c06100at 624.160 kb on + strand, within PGA1_c06100at 624.168 kb on + strand, within PGA1_c06100at 624.285 kb on + strand, within PGA1_c06100at 624.425 kb on + strand, within PGA1_c06100at 624.478 kb on + strand, within PGA1_c06100at 624.569 kb on + strand, within PGA1_c06100at 624.617 kb on - strand, within PGA1_c06100at 624.727 kb on - strand, within PGA1_c06100at 624.751 kb on + strandat 624.767 kb on - strandat 624.786 kb on - strandat 624.808 kb on + strandat 624.821 kb on - strandat 624.879 kb on - strandat 625.064 kb on + strand, within PGA1_c06110at 625.184 kb on + strand, within PGA1_c06110at 625.283 kb on - strand, within PGA1_c06110at 625.482 kb on - strand, within PGA1_c06110at 625.511 kb on - strand, within PGA1_c06110at 625.559 kb on - strand, within PGA1_c06110at 625.576 kb on + strand, within PGA1_c06110at 625.576 kb on + strand, within PGA1_c06110at 625.586 kb on + strand, within PGA1_c06110at 625.597 kb on - strand, within PGA1_c06110at 625.783 kb on + strand, within PGA1_c06110at 625.795 kb on + strand, within PGA1_c06110

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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622,895 - -1.2
622,900 - +1.0
622,905 - +0.5
622,918 - -0.4
622,941 + -0.3
622,949 - -1.2
623,007 + PGA1_c06090 0.14 -0.4
623,033 + PGA1_c06090 0.17 -1.0
623,033 + PGA1_c06090 0.17 +2.0
623,033 + PGA1_c06090 0.17 +1.4
623,041 - PGA1_c06090 0.18 -0.4
623,041 - PGA1_c06090 0.18 -1.4
623,041 - PGA1_c06090 0.18 -0.0
623,041 - PGA1_c06090 0.18 -1.0
623,041 - PGA1_c06090 0.18 -1.0
623,128 - PGA1_c06090 0.27 +0.5
623,153 + PGA1_c06090 0.29 +0.6
623,222 - PGA1_c06090 0.36 +1.0
623,244 - PGA1_c06090 0.38 +0.6
623,256 + PGA1_c06090 0.40 +0.6
623,292 - PGA1_c06090 0.43 +0.1
623,374 + PGA1_c06090 0.52 +0.4
623,381 - PGA1_c06090 0.52 -0.0
623,425 + PGA1_c06090 0.57 -0.0
623,456 + PGA1_c06090 0.60 -0.0
623,464 - PGA1_c06090 0.61 -0.7
623,466 + PGA1_c06090 0.61 -1.0
623,474 - PGA1_c06090 0.62 +0.4
623,487 + PGA1_c06090 0.63 -1.2
623,502 + PGA1_c06090 0.65 +0.4
623,567 + PGA1_c06090 0.71 -1.4
623,575 - PGA1_c06090 0.72 -2.2
623,577 + PGA1_c06090 0.72 -0.0
623,577 + PGA1_c06090 0.72 +0.4
623,640 - PGA1_c06090 0.79 -0.0
623,668 + PGA1_c06090 0.82 +1.0
623,671 - PGA1_c06090 0.82 -1.4
623,676 - PGA1_c06090 0.82 +2.5
623,724 + PGA1_c06090 0.87 -1.0
623,798 + -0.0
623,808 - -0.8
623,904 - +0.4
623,940 + +1.7
624,031 + PGA1_c06100 0.18 -0.4
624,054 + PGA1_c06100 0.20 -1.0
624,079 + PGA1_c06100 0.23 -0.4
624,099 + PGA1_c06100 0.25 -0.9
624,121 + PGA1_c06100 0.27 -1.4
624,160 + PGA1_c06100 0.31 +2.2
624,168 + PGA1_c06100 0.32 -1.6
624,285 + PGA1_c06100 0.44 -0.4
624,425 + PGA1_c06100 0.59 -0.0
624,478 + PGA1_c06100 0.64 +1.0
624,569 + PGA1_c06100 0.73 +1.0
624,617 - PGA1_c06100 0.78 -1.6
624,727 - PGA1_c06100 0.90 -0.3
624,751 + -0.5
624,767 - -0.6
624,786 - -1.2
624,808 + -0.2
624,821 - -0.6
624,879 - +0.2
625,064 + PGA1_c06110 0.16 -0.6
625,184 + PGA1_c06110 0.25 -1.4
625,283 - PGA1_c06110 0.32 -0.0
625,482 - PGA1_c06110 0.45 -1.4
625,511 - PGA1_c06110 0.47 -0.0
625,559 - PGA1_c06110 0.51 +1.4
625,576 + PGA1_c06110 0.52 -0.4
625,576 + PGA1_c06110 0.52 -0.6
625,586 + PGA1_c06110 0.53 -1.9
625,597 - PGA1_c06110 0.53 -0.0
625,783 + PGA1_c06110 0.66 +1.0
625,795 + PGA1_c06110 0.67 +2.0

Or see this region's nucleotide sequence