Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05020

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05010 and PGA1_c05020 are separated by 4 nucleotidesPGA1_c05020 and PGA1_c05040 are separated by 670 nucleotides PGA1_c05010: PGA1_c05010 - putative dioxygenase, at 495,178 to 496,416 _c05010 PGA1_c05020: PGA1_c05020 - phenylacetic acid degradation NADH oxidoreductase, at 496,421 to 497,506 _c05020 PGA1_c05040: PGA1_c05040 - transposase, at 498,177 to 498,566 _c05040 Position (kb) 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2 3at 495.443 kb on + strand, within PGA1_c05010at 495.446 kb on - strand, within PGA1_c05010at 495.448 kb on + strand, within PGA1_c05010at 495.448 kb on + strand, within PGA1_c05010at 495.451 kb on - strand, within PGA1_c05010at 495.451 kb on - strand, within PGA1_c05010at 495.453 kb on + strand, within PGA1_c05010at 495.456 kb on - strand, within PGA1_c05010at 495.456 kb on - strand, within PGA1_c05010at 495.476 kb on + strand, within PGA1_c05010at 495.476 kb on + strand, within PGA1_c05010at 495.476 kb on + strand, within PGA1_c05010at 495.476 kb on + strand, within PGA1_c05010at 495.484 kb on - strand, within PGA1_c05010at 495.484 kb on - strand, within PGA1_c05010at 495.484 kb on - strand, within PGA1_c05010at 495.485 kb on - strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.486 kb on + strand, within PGA1_c05010at 495.491 kb on + strand, within PGA1_c05010at 495.491 kb on + strand, within PGA1_c05010at 495.491 kb on + strand, within PGA1_c05010at 495.493 kb on + strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.494 kb on - strand, within PGA1_c05010at 495.499 kb on - strand, within PGA1_c05010at 495.499 kb on - strand, within PGA1_c05010at 495.529 kb on + strand, within PGA1_c05010at 495.539 kb on - strand, within PGA1_c05010at 495.539 kb on - strand, within PGA1_c05010at 495.539 kb on - strand, within PGA1_c05010at 495.539 kb on - strand, within PGA1_c05010at 495.556 kb on + strand, within PGA1_c05010at 495.566 kb on + strand, within PGA1_c05010at 495.566 kb on - strand, within PGA1_c05010at 495.576 kb on - strand, within PGA1_c05010at 495.587 kb on + strand, within PGA1_c05010at 495.596 kb on + strand, within PGA1_c05010at 495.604 kb on - strand, within PGA1_c05010at 495.610 kb on + strand, within PGA1_c05010at 495.610 kb on + strand, within PGA1_c05010at 495.618 kb on - strand, within PGA1_c05010at 495.618 kb on - strand, within PGA1_c05010at 495.618 kb on - strand, within PGA1_c05010at 495.629 kb on - strand, within PGA1_c05010at 495.664 kb on + strand, within PGA1_c05010at 495.672 kb on - strand, within PGA1_c05010at 495.680 kb on + strand, within PGA1_c05010at 495.680 kb on + strand, within PGA1_c05010at 495.689 kb on + strand, within PGA1_c05010at 495.696 kb on - strand, within PGA1_c05010at 495.697 kb on - strand, within PGA1_c05010at 495.697 kb on - strand, within PGA1_c05010at 495.765 kb on + strand, within PGA1_c05010at 495.765 kb on + strand, within PGA1_c05010at 495.777 kb on + strand, within PGA1_c05010at 495.810 kb on + strand, within PGA1_c05010at 495.818 kb on - strand, within PGA1_c05010at 495.818 kb on - strand, within PGA1_c05010at 495.821 kb on + strand, within PGA1_c05010at 495.829 kb on - strand, within PGA1_c05010at 495.829 kb on - strand, within PGA1_c05010at 495.846 kb on + strand, within PGA1_c05010at 495.846 kb on + strand, within PGA1_c05010at 495.846 kb on - strand, within PGA1_c05010at 495.854 kb on - strand, within PGA1_c05010at 495.862 kb on + strand, within PGA1_c05010at 495.867 kb on + strand, within PGA1_c05010at 495.887 kb on - strand, within PGA1_c05010at 495.887 kb on - strand, within PGA1_c05010at 495.892 kb on - strand, within PGA1_c05010at 495.902 kb on - strand, within PGA1_c05010at 495.902 kb on - strand, within PGA1_c05010at 495.902 kb on - strand, within PGA1_c05010at 495.902 kb on - strand, within PGA1_c05010at 495.948 kb on + strand, within PGA1_c05010at 495.948 kb on + strand, within PGA1_c05010at 495.961 kb on + strand, within PGA1_c05010at 495.961 kb on + strand, within PGA1_c05010at 495.989 kb on + strand, within PGA1_c05010at 495.997 kb on - strand, within PGA1_c05010at 496.017 kb on - strand, within PGA1_c05010at 496.093 kb on - strand, within PGA1_c05010at 496.093 kb on - strand, within PGA1_c05010at 496.109 kb on + strand, within PGA1_c05010at 496.114 kb on + strand, within PGA1_c05010at 496.117 kb on - strand, within PGA1_c05010at 496.117 kb on - strand, within PGA1_c05010at 496.117 kb on - strand, within PGA1_c05010at 496.137 kb on - strand, within PGA1_c05010at 496.163 kb on + strand, within PGA1_c05010at 496.171 kb on - strand, within PGA1_c05010at 496.171 kb on - strand, within PGA1_c05010at 496.184 kb on + strand, within PGA1_c05010at 496.195 kb on + strand, within PGA1_c05010at 496.210 kb on - strand, within PGA1_c05010at 496.222 kb on + strand, within PGA1_c05010at 496.227 kb on + strand, within PGA1_c05010at 496.227 kb on + strand, within PGA1_c05010at 496.235 kb on - strand, within PGA1_c05010at 496.235 kb on - strand, within PGA1_c05010at 496.235 kb on - strand, within PGA1_c05010at 496.251 kb on + strand, within PGA1_c05010at 496.314 kb on + strandat 496.339 kb on - strandat 496.347 kb on + strandat 496.391 kb on + strandat 496.391 kb on + strandat 496.391 kb on + strandat 496.399 kb on - strandat 496.399 kb on - strandat 496.399 kb on - strandat 496.399 kb on - strandat 496.399 kb on - strandat 496.420 kb on + strandat 496.466 kb on + strandat 496.474 kb on + strandat 496.501 kb on - strandat 496.502 kb on + strandat 496.570 kb on + strand, within PGA1_c05020at 496.597 kb on + strand, within PGA1_c05020at 496.603 kb on + strand, within PGA1_c05020at 496.627 kb on - strand, within PGA1_c05020at 496.660 kb on + strand, within PGA1_c05020at 496.695 kb on + strand, within PGA1_c05020at 496.695 kb on + strand, within PGA1_c05020at 496.706 kb on + strand, within PGA1_c05020at 496.706 kb on + strand, within PGA1_c05020at 496.713 kb on - strand, within PGA1_c05020at 496.740 kb on + strand, within PGA1_c05020at 496.741 kb on - strand, within PGA1_c05020at 496.776 kb on - strand, within PGA1_c05020at 496.786 kb on - strand, within PGA1_c05020at 496.838 kb on - strand, within PGA1_c05020at 496.840 kb on + strand, within PGA1_c05020at 496.850 kb on + strand, within PGA1_c05020at 496.850 kb on + strand, within PGA1_c05020at 496.961 kb on - strand, within PGA1_c05020at 497.039 kb on - strand, within PGA1_c05020at 497.084 kb on + strand, within PGA1_c05020at 497.089 kb on + strand, within PGA1_c05020at 497.092 kb on - strand, within PGA1_c05020at 497.092 kb on - strand, within PGA1_c05020at 497.094 kb on - strand, within PGA1_c05020at 497.094 kb on - strand, within PGA1_c05020at 497.097 kb on + strand, within PGA1_c05020at 497.105 kb on + strand, within PGA1_c05020at 497.105 kb on - strand, within PGA1_c05020at 497.168 kb on + strand, within PGA1_c05020at 497.213 kb on + strand, within PGA1_c05020at 497.236 kb on - strand, within PGA1_c05020at 497.236 kb on - strand, within PGA1_c05020at 497.236 kb on - strand, within PGA1_c05020at 497.247 kb on + strand, within PGA1_c05020at 497.268 kb on + strand, within PGA1_c05020at 497.269 kb on + strand, within PGA1_c05020at 497.269 kb on + strand, within PGA1_c05020at 497.277 kb on - strand, within PGA1_c05020at 497.281 kb on - strand, within PGA1_c05020at 497.308 kb on - strand, within PGA1_c05020at 497.308 kb on - strand, within PGA1_c05020at 497.314 kb on - strand, within PGA1_c05020at 497.314 kb on - strand, within PGA1_c05020at 497.314 kb on - strand, within PGA1_c05020at 497.350 kb on - strand, within PGA1_c05020at 497.355 kb on + strand, within PGA1_c05020at 497.373 kb on + strand, within PGA1_c05020at 497.424 kb on - strandat 497.440 kb on + strandat 497.448 kb on - strandat 497.450 kb on + strandat 497.450 kb on + strandat 497.458 kb on - strandat 497.458 kb on - strandat 497.469 kb on + strandat 497.469 kb on + strandat 497.472 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.477 kb on - strandat 497.478 kb on - strandat 497.520 kb on + strandat 497.525 kb on + strandat 497.525 kb on + strandat 497.528 kb on - strandat 497.528 kb on - strandat 497.528 kb on - strandat 497.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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495,443 + PGA1_c05010 0.21 -0.2
495,446 - PGA1_c05010 0.22 -1.9
495,448 + PGA1_c05010 0.22 +0.1
495,448 + PGA1_c05010 0.22 -0.9
495,451 - PGA1_c05010 0.22 -0.7
495,451 - PGA1_c05010 0.22 +0.6
495,453 + PGA1_c05010 0.22 +0.2
495,456 - PGA1_c05010 0.22 +0.4
495,456 - PGA1_c05010 0.22 +0.3
495,476 + PGA1_c05010 0.24 +0.0
495,476 + PGA1_c05010 0.24 +0.3
495,476 + PGA1_c05010 0.24 -0.0
495,476 + PGA1_c05010 0.24 +1.7
495,484 - PGA1_c05010 0.25 +1.3
495,484 - PGA1_c05010 0.25 +0.7
495,484 - PGA1_c05010 0.25 +0.5
495,485 - PGA1_c05010 0.25 +0.4
495,486 + PGA1_c05010 0.25 +0.6
495,486 + PGA1_c05010 0.25 -0.5
495,486 + PGA1_c05010 0.25 +0.3
495,486 + PGA1_c05010 0.25 +0.4
495,486 + PGA1_c05010 0.25 +0.1
495,486 + PGA1_c05010 0.25 -0.0
495,486 + PGA1_c05010 0.25 +1.2
495,486 + PGA1_c05010 0.25 +0.9
495,486 + PGA1_c05010 0.25 -1.0
495,486 + PGA1_c05010 0.25 -1.8
495,486 + PGA1_c05010 0.25 -1.1
495,486 + PGA1_c05010 0.25 -0.2
495,486 + PGA1_c05010 0.25 +0.5
495,491 + PGA1_c05010 0.25 +1.1
495,491 + PGA1_c05010 0.25 -0.3
495,491 + PGA1_c05010 0.25 +1.3
495,493 + PGA1_c05010 0.25 -0.3
495,494 - PGA1_c05010 0.26 +1.8
495,494 - PGA1_c05010 0.26 +0.0
495,494 - PGA1_c05010 0.26 -1.5
495,494 - PGA1_c05010 0.26 +0.3
495,494 - PGA1_c05010 0.26 -1.3
495,494 - PGA1_c05010 0.26 +0.9
495,494 - PGA1_c05010 0.26 -0.2
495,494 - PGA1_c05010 0.26 +1.0
495,494 - PGA1_c05010 0.26 +0.5
495,494 - PGA1_c05010 0.26 +0.9
495,494 - PGA1_c05010 0.26 -1.7
495,494 - PGA1_c05010 0.26 +0.0
495,494 - PGA1_c05010 0.26 -1.4
495,494 - PGA1_c05010 0.26 +0.1
495,494 - PGA1_c05010 0.26 -0.7
495,494 - PGA1_c05010 0.26 +0.9
495,494 - PGA1_c05010 0.26 -1.0
495,494 - PGA1_c05010 0.26 -0.1
495,494 - PGA1_c05010 0.26 +0.5
495,494 - PGA1_c05010 0.26 -0.5
495,494 - PGA1_c05010 0.26 -0.2
495,499 - PGA1_c05010 0.26 -0.3
495,499 - PGA1_c05010 0.26 -0.3
495,529 + PGA1_c05010 0.28 -1.4
495,539 - PGA1_c05010 0.29 -0.6
495,539 - PGA1_c05010 0.29 +0.5
495,539 - PGA1_c05010 0.29 -0.7
495,539 - PGA1_c05010 0.29 +0.9
495,556 + PGA1_c05010 0.31 +0.5
495,566 + PGA1_c05010 0.31 +0.1
495,566 - PGA1_c05010 0.31 +0.7
495,576 - PGA1_c05010 0.32 +0.7
495,587 + PGA1_c05010 0.33 +1.5
495,596 + PGA1_c05010 0.34 -0.2
495,604 - PGA1_c05010 0.34 -2.5
495,610 + PGA1_c05010 0.35 +0.6
495,610 + PGA1_c05010 0.35 -0.5
495,618 - PGA1_c05010 0.36 +0.1
495,618 - PGA1_c05010 0.36 +0.7
495,618 - PGA1_c05010 0.36 +1.1
495,629 - PGA1_c05010 0.36 +0.3
495,664 + PGA1_c05010 0.39 +0.6
495,672 - PGA1_c05010 0.40 +3.6
495,680 + PGA1_c05010 0.41 -0.5
495,680 + PGA1_c05010 0.41 +1.4
495,689 + PGA1_c05010 0.41 +0.5
495,696 - PGA1_c05010 0.42 +1.6
495,697 - PGA1_c05010 0.42 +1.1
495,697 - PGA1_c05010 0.42 -0.7
495,765 + PGA1_c05010 0.47 -0.3
495,765 + PGA1_c05010 0.47 +1.0
495,777 + PGA1_c05010 0.48 +0.6
495,810 + PGA1_c05010 0.51 -0.7
495,818 - PGA1_c05010 0.52 +1.1
495,818 - PGA1_c05010 0.52 +0.5
495,821 + PGA1_c05010 0.52 +0.3
495,829 - PGA1_c05010 0.53 +0.1
495,829 - PGA1_c05010 0.53 -1.2
495,846 + PGA1_c05010 0.54 +0.4
495,846 + PGA1_c05010 0.54 +0.7
495,846 - PGA1_c05010 0.54 +0.2
495,854 - PGA1_c05010 0.55 +0.7
495,862 + PGA1_c05010 0.55 +0.2
495,867 + PGA1_c05010 0.56 -1.5
495,887 - PGA1_c05010 0.57 -0.4
495,887 - PGA1_c05010 0.57 -0.3
495,892 - PGA1_c05010 0.58 +1.8
495,902 - PGA1_c05010 0.58 -0.5
495,902 - PGA1_c05010 0.58 +0.8
495,902 - PGA1_c05010 0.58 +0.2
495,902 - PGA1_c05010 0.58 +1.3
495,948 + PGA1_c05010 0.62 +0.2
495,948 + PGA1_c05010 0.62 +0.5
495,961 + PGA1_c05010 0.63 +0.1
495,961 + PGA1_c05010 0.63 +0.1
495,989 + PGA1_c05010 0.65 +0.8
495,997 - PGA1_c05010 0.66 +0.6
496,017 - PGA1_c05010 0.68 +1.0
496,093 - PGA1_c05010 0.74 -2.3
496,093 - PGA1_c05010 0.74 -0.2
496,109 + PGA1_c05010 0.75 +0.8
496,114 + PGA1_c05010 0.76 -1.0
496,117 - PGA1_c05010 0.76 -0.3
496,117 - PGA1_c05010 0.76 +0.5
496,117 - PGA1_c05010 0.76 +0.2
496,137 - PGA1_c05010 0.77 +1.3
496,163 + PGA1_c05010 0.79 +0.7
496,171 - PGA1_c05010 0.80 +1.2
496,171 - PGA1_c05010 0.80 +0.6
496,184 + PGA1_c05010 0.81 +0.2
496,195 + PGA1_c05010 0.82 -0.7
496,210 - PGA1_c05010 0.83 +0.3
496,222 + PGA1_c05010 0.84 +0.3
496,227 + PGA1_c05010 0.85 +0.4
496,227 + PGA1_c05010 0.85 +1.1
496,235 - PGA1_c05010 0.85 -0.3
496,235 - PGA1_c05010 0.85 -0.4
496,235 - PGA1_c05010 0.85 +0.4
496,251 + PGA1_c05010 0.87 +0.7
496,314 + -0.1
496,339 - +0.1
496,347 + +1.4
496,391 + -0.1
496,391 + -0.5
496,391 + +0.1
496,399 - +0.6
496,399 - +0.1
496,399 - +0.3
496,399 - +0.5
496,399 - +0.5
496,420 + -0.2
496,466 + -0.0
496,474 + -0.2
496,501 - +1.2
496,502 + +0.4
496,570 + PGA1_c05020 0.14 -0.5
496,597 + PGA1_c05020 0.16 -0.9
496,603 + PGA1_c05020 0.17 +0.5
496,627 - PGA1_c05020 0.19 -1.3
496,660 + PGA1_c05020 0.22 -1.0
496,695 + PGA1_c05020 0.25 +0.7
496,695 + PGA1_c05020 0.25 +1.5
496,706 + PGA1_c05020 0.26 +1.5
496,706 + PGA1_c05020 0.26 +1.5
496,713 - PGA1_c05020 0.27 +0.2
496,740 + PGA1_c05020 0.29 -0.4
496,741 - PGA1_c05020 0.29 -0.5
496,776 - PGA1_c05020 0.33 -0.7
496,786 - PGA1_c05020 0.34 +0.3
496,838 - PGA1_c05020 0.38 +0.5
496,840 + PGA1_c05020 0.39 -0.7
496,850 + PGA1_c05020 0.40 -1.6
496,850 + PGA1_c05020 0.40 -0.9
496,961 - PGA1_c05020 0.50 +1.1
497,039 - PGA1_c05020 0.57 -0.1
497,084 + PGA1_c05020 0.61 +1.8
497,089 + PGA1_c05020 0.62 -0.2
497,092 - PGA1_c05020 0.62 -0.1
497,092 - PGA1_c05020 0.62 -1.4
497,094 - PGA1_c05020 0.62 +0.5
497,094 - PGA1_c05020 0.62 +2.4
497,097 + PGA1_c05020 0.62 +0.4
497,105 + PGA1_c05020 0.63 -0.9
497,105 - PGA1_c05020 0.63 +0.3
497,168 + PGA1_c05020 0.69 +0.2
497,213 + PGA1_c05020 0.73 +0.4
497,236 - PGA1_c05020 0.75 +0.1
497,236 - PGA1_c05020 0.75 +0.7
497,236 - PGA1_c05020 0.75 -0.4
497,247 + PGA1_c05020 0.76 +0.6
497,268 + PGA1_c05020 0.78 +1.1
497,269 + PGA1_c05020 0.78 +0.6
497,269 + PGA1_c05020 0.78 +0.7
497,277 - PGA1_c05020 0.79 +0.6
497,281 - PGA1_c05020 0.79 -2.3
497,308 - PGA1_c05020 0.82 -0.4
497,308 - PGA1_c05020 0.82 -1.3
497,314 - PGA1_c05020 0.82 +0.4
497,314 - PGA1_c05020 0.82 +0.2
497,314 - PGA1_c05020 0.82 +1.7
497,350 - PGA1_c05020 0.86 +1.5
497,355 + PGA1_c05020 0.86 +0.5
497,373 + PGA1_c05020 0.88 -0.3
497,424 - +1.3
497,440 + -1.3
497,448 - +1.4
497,450 + +1.4
497,450 + +0.9
497,458 - -0.2
497,458 - -0.6
497,469 + +0.8
497,469 + -1.7
497,472 - +0.7
497,477 - -0.5
497,477 - +0.6
497,477 - +0.3
497,477 - +0.6
497,477 - +0.2
497,477 - +0.5
497,477 - -2.6
497,478 - -0.7
497,520 + +1.1
497,525 + +0.5
497,525 + -0.1
497,528 - +0.4
497,528 - -0.9
497,528 - +0.6
497,580 - +0.6

Or see this region's nucleotide sequence