Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04980 and PGA1_c04990 overlap by 11 nucleotides PGA1_c04990 and PGA1_c05000 are separated by 398 nucleotides
PGA1_c04980: PGA1_c04980 - putative transposase, at 489,081 to 489,872
_c04980
PGA1_c04990: PGA1_c04990 - transposase, at 489,862 to 491,391
_c04990
PGA1_c05000: PGA1_c05000 - Predicted membrane protein, at 491,790 to 494,612
_c05000
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.867 kb on - strand at 488.902 kb on - strand at 488.933 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand at 488.949 kb on - strand at 489.023 kb on - strand at 491.480 kb on + strand at 491.480 kb on + strand at 491.570 kb on - strand at 491.648 kb on - strand at 491.781 kb on + strand at 491.788 kb on + strand at 491.789 kb on - strand at 491.789 kb on - strand at 491.842 kb on + strand at 491.842 kb on + strand at 491.857 kb on + strand at 491.862 kb on + strand at 491.865 kb on - strand at 491.867 kb on + strand at 491.867 kb on + strand at 491.875 kb on - strand at 491.941 kb on - strand at 491.948 kb on + strand at 491.951 kb on - strand at 491.981 kb on + strand at 492.065 kb on + strand at 492.072 kb on + strand at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.121 kb on + strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.129 kb on - strand, within PGA1_c05000 at 492.166 kb on + strand, within PGA1_c05000 at 492.174 kb on - strand, within PGA1_c05000 at 492.174 kb on - strand, within PGA1_c05000 at 492.268 kb on + strand, within PGA1_c05000 at 492.276 kb on - strand, within PGA1_c05000 at 492.307 kb on + strand, within PGA1_c05000 at 492.307 kb on + strand, within PGA1_c05000 at 492.315 kb on - strand, within PGA1_c05000 at 492.315 kb on - strand, within PGA1_c05000 at 492.343 kb on + strand, within PGA1_c05000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 488,867 - +0.0 488,902 - +0.2 488,933 + +0.5 488,941 + -0.5 488,942 - +0.3 488,949 - -0.4 489,023 - -0.9 491,480 + +1.2 491,480 + +1.1 491,570 - +0.8 491,648 - +0.5 491,781 + +0.9 491,788 + +1.0 491,789 - +0.4 491,789 - -1.9 491,842 + -0.7 491,842 + +0.7 491,857 + -3.1 491,862 + +1.4 491,865 - +0.5 491,867 + -0.2 491,867 + -0.3 491,875 - -0.5 491,941 - -1.1 491,948 + -0.5 491,951 - +0.9 491,981 + -0.4 492,065 + +0.5 492,072 + -2.3 492,121 + PGA1_c05000 0.12 -1.4 492,121 + PGA1_c05000 0.12 -0.8 492,121 + PGA1_c05000 0.12 -0.4 492,121 + PGA1_c05000 0.12 +0.1 492,121 + PGA1_c05000 0.12 -0.5 492,129 - PGA1_c05000 0.12 -2.5 492,129 - PGA1_c05000 0.12 +0.3 492,129 - PGA1_c05000 0.12 +1.8 492,129 - PGA1_c05000 0.12 +0.4 492,129 - PGA1_c05000 0.12 +0.8 492,166 + PGA1_c05000 0.13 +0.2 492,174 - PGA1_c05000 0.14 -2.2 492,174 - PGA1_c05000 0.14 +1.5 492,268 + PGA1_c05000 0.17 +0.4 492,276 - PGA1_c05000 0.17 -1.8 492,307 + PGA1_c05000 0.18 +1.9 492,307 + PGA1_c05000 0.18 -0.2 492,315 - PGA1_c05000 0.19 -0.1 492,315 - PGA1_c05000 0.19 +1.7 492,343 + PGA1_c05000 0.20 -2.1
Or see this region's nucleotide sequence