Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00230 and PGA1_78p00240 are separated by 18 nucleotides PGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotides PGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotides
PGA1_78p00230: PGA1_78p00230 - putative NADH-ubiquinone oxidoreductase, at 26,250 to 27,800
_78p00230
PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284
_78p00240
PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988
_78p00250
PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536
_78p00260
Position (kb) 27
28
29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 27.374 kb on + strand, within PGA1_78p00230 at 27.384 kb on + strand, within PGA1_78p00230 at 27.718 kb on + strand at 27.815 kb on + strand at 27.880 kb on - strand at 28.316 kb on + strand, within PGA1_78p00240 at 28.512 kb on + strand, within PGA1_78p00240 at 28.520 kb on - strand, within PGA1_78p00240 at 28.758 kb on - strand, within PGA1_78p00240 at 28.877 kb on + strand, within PGA1_78p00240 at 29.535 kb on - strand, within PGA1_78p00240 at 29.614 kb on - strand, within PGA1_78p00240 at 29.826 kb on + strand, within PGA1_78p00240 at 30.437 kb on + strand at 30.644 kb on - strand, within PGA1_78p00250 at 30.644 kb on - strand, within PGA1_78p00250 at 30.689 kb on - strand, within PGA1_78p00250 at 30.919 kb on + strand, within PGA1_78p00250 at 31.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 27,374 + PGA1_78p00230 0.72 -1.3 27,384 + PGA1_78p00230 0.73 +0.4 27,718 + +2.1 27,815 + +1.1 27,880 - +0.6 28,316 + PGA1_78p00240 0.20 -0.2 28,512 + PGA1_78p00240 0.28 +1.1 28,520 - PGA1_78p00240 0.28 -0.0 28,758 - PGA1_78p00240 0.38 -0.7 28,877 + PGA1_78p00240 0.43 +2.1 29,535 - PGA1_78p00240 0.70 +1.1 29,614 - PGA1_78p00240 0.73 +1.7 29,826 + PGA1_78p00240 0.81 +2.4 30,437 + -1.8 30,644 - PGA1_78p00250 0.44 +1.3 30,644 - PGA1_78p00250 0.44 +0.7 30,689 - PGA1_78p00250 0.51 +0.1 30,919 + PGA1_78p00250 0.89 +3.1 31,115 + -0.2
Or see this region's nucleotide sequence