Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03230

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03210 and PGA1_c03220 overlap by 4 nucleotidesPGA1_c03220 and PGA1_c03230 are separated by 59 nucleotidesPGA1_c03230 and PGA1_c03240 are separated by 62 nucleotidesPGA1_c03240 and PGA1_c03250 overlap by 4 nucleotides PGA1_c03210: PGA1_c03210 - branched-chain amino acid transport protein azlD-like protein, at 308,374 to 308,709 _c03210 PGA1_c03220: PGA1_c03220 - branched-chain amino acid transport protein azlC-like protein, at 308,706 to 309,431 _c03220 PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393 _c03230 PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097 _c03240 PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 308.524 kb on + strand, within PGA1_c03210at 308.527 kb on + strand, within PGA1_c03210at 308.567 kb on + strand, within PGA1_c03210at 308.567 kb on - strand, within PGA1_c03210at 308.575 kb on - strand, within PGA1_c03210at 308.595 kb on + strand, within PGA1_c03210at 308.648 kb on - strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.675 kb on + strand, within PGA1_c03210at 308.683 kb on - strandat 308.683 kb on - strandat 308.683 kb on - strandat 308.683 kb on - strandat 308.683 kb on - strandat 308.686 kb on + strandat 308.693 kb on - strandat 308.693 kb on - strandat 308.718 kb on - strandat 308.718 kb on - strandat 308.754 kb on - strandat 308.756 kb on + strandat 308.761 kb on - strandat 308.789 kb on - strand, within PGA1_c03220at 308.803 kb on - strandat 308.816 kb on - strand, within PGA1_c03220at 308.826 kb on - strand, within PGA1_c03220at 308.826 kb on - strand, within PGA1_c03220at 308.826 kb on - strand, within PGA1_c03220at 308.826 kb on - strand, within PGA1_c03220at 308.826 kb on - strand, within PGA1_c03220at 308.868 kb on - strand, within PGA1_c03220at 308.879 kb on + strand, within PGA1_c03220at 308.879 kb on + strand, within PGA1_c03220at 308.879 kb on + strand, within PGA1_c03220at 308.887 kb on - strand, within PGA1_c03220at 308.957 kb on + strand, within PGA1_c03220at 308.975 kb on - strand, within PGA1_c03220at 308.981 kb on - strand, within PGA1_c03220at 309.005 kb on + strand, within PGA1_c03220at 309.035 kb on + strand, within PGA1_c03220at 309.035 kb on + strand, within PGA1_c03220at 309.035 kb on + strand, within PGA1_c03220at 309.043 kb on - strand, within PGA1_c03220at 309.068 kb on + strand, within PGA1_c03220at 309.068 kb on + strand, within PGA1_c03220at 309.082 kb on + strand, within PGA1_c03220at 309.090 kb on - strand, within PGA1_c03220at 309.154 kb on - strand, within PGA1_c03220at 309.250 kb on + strand, within PGA1_c03220at 309.258 kb on - strand, within PGA1_c03220at 309.258 kb on - strand, within PGA1_c03220at 309.258 kb on - strand, within PGA1_c03220at 309.268 kb on - strand, within PGA1_c03220at 309.280 kb on - strand, within PGA1_c03220at 309.304 kb on + strand, within PGA1_c03220at 309.306 kb on - strand, within PGA1_c03220at 309.459 kb on - strandat 309.460 kb on + strandat 309.460 kb on + strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.515 kb on - strandat 309.520 kb on - strandat 309.739 kb on + strand, within PGA1_c03230at 309.749 kb on + strand, within PGA1_c03230at 309.782 kb on + strand, within PGA1_c03230at 309.827 kb on - strand, within PGA1_c03230at 309.874 kb on - strand, within PGA1_c03230at 309.927 kb on + strand, within PGA1_c03230at 309.927 kb on + strand, within PGA1_c03230at 309.929 kb on + strand, within PGA1_c03230at 309.929 kb on + strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.986 kb on - strand, within PGA1_c03230at 309.990 kb on + strand, within PGA1_c03230at 309.990 kb on + strand, within PGA1_c03230at 309.998 kb on - strand, within PGA1_c03230at 309.998 kb on - strand, within PGA1_c03230at 310.026 kb on + strand, within PGA1_c03230at 310.045 kb on + strand, within PGA1_c03230at 310.069 kb on + strand, within PGA1_c03230at 310.153 kb on + strand, within PGA1_c03230at 310.158 kb on + strand, within PGA1_c03230at 310.166 kb on - strand, within PGA1_c03230at 310.299 kb on - strand, within PGA1_c03230at 310.348 kb on - strandat 310.440 kb on + strandat 310.639 kb on + strand, within PGA1_c03240at 310.675 kb on - strand, within PGA1_c03240at 310.707 kb on - strand, within PGA1_c03240at 310.721 kb on - strand, within PGA1_c03240at 310.811 kb on + strand, within PGA1_c03240at 310.816 kb on + strand, within PGA1_c03240at 310.922 kb on + strand, within PGA1_c03240at 310.971 kb on - strand, within PGA1_c03240at 310.981 kb on - strand, within PGA1_c03240at 310.990 kb on + strand, within PGA1_c03240at 310.998 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.049 kb on + strandat 311.057 kb on - strandat 311.076 kb on + strandat 311.099 kb on + strandat 311.099 kb on + strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.109 kb on + strandat 311.124 kb on - strandat 311.179 kb on + strand, within PGA1_c03250at 311.208 kb on + strand, within PGA1_c03250at 311.221 kb on - strand, within PGA1_c03250at 311.270 kb on + strand, within PGA1_c03250at 311.331 kb on + strand, within PGA1_c03250at 311.376 kb on + strand, within PGA1_c03250

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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308,524 + PGA1_c03210 0.45 +1.2
308,527 + PGA1_c03210 0.46 +0.4
308,567 + PGA1_c03210 0.57 +0.3
308,567 - PGA1_c03210 0.57 -1.0
308,575 - PGA1_c03210 0.60 +0.2
308,595 + PGA1_c03210 0.66 +0.6
308,648 - PGA1_c03210 0.82 +0.6
308,675 + PGA1_c03210 0.90 -0.6
308,675 + PGA1_c03210 0.90 +0.2
308,675 + PGA1_c03210 0.90 -1.7
308,675 + PGA1_c03210 0.90 -0.2
308,675 + PGA1_c03210 0.90 -0.5
308,675 + PGA1_c03210 0.90 -0.0
308,683 - -0.4
308,683 - -0.1
308,683 - +1.2
308,683 - +0.3
308,683 - -3.2
308,686 + -0.8
308,693 - -0.6
308,693 - -1.5
308,718 - -3.2
308,718 - -0.8
308,754 - +0.6
308,756 + -0.9
308,761 - -0.2
308,789 - PGA1_c03220 0.11 -0.3
308,803 - -1.4
308,816 - PGA1_c03220 0.15 -1.7
308,826 - PGA1_c03220 0.17 +1.0
308,826 - PGA1_c03220 0.17 +0.0
308,826 - PGA1_c03220 0.17 -0.7
308,826 - PGA1_c03220 0.17 -0.3
308,826 - PGA1_c03220 0.17 -2.0
308,868 - PGA1_c03220 0.22 -2.2
308,879 + PGA1_c03220 0.24 -1.4
308,879 + PGA1_c03220 0.24 +1.0
308,879 + PGA1_c03220 0.24 -0.4
308,887 - PGA1_c03220 0.25 -1.7
308,957 + PGA1_c03220 0.35 -1.3
308,975 - PGA1_c03220 0.37 -1.3
308,981 - PGA1_c03220 0.38 -0.1
309,005 + PGA1_c03220 0.41 -0.1
309,035 + PGA1_c03220 0.45 -1.2
309,035 + PGA1_c03220 0.45 -0.0
309,035 + PGA1_c03220 0.45 -2.8
309,043 - PGA1_c03220 0.46 -1.2
309,068 + PGA1_c03220 0.50 -2.8
309,068 + PGA1_c03220 0.50 +0.3
309,082 + PGA1_c03220 0.52 +1.2
309,090 - PGA1_c03220 0.53 -0.8
309,154 - PGA1_c03220 0.62 -0.1
309,250 + PGA1_c03220 0.75 -0.2
309,258 - PGA1_c03220 0.76 -0.3
309,258 - PGA1_c03220 0.76 -0.3
309,258 - PGA1_c03220 0.76 +0.6
309,268 - PGA1_c03220 0.77 +0.4
309,280 - PGA1_c03220 0.79 -0.3
309,304 + PGA1_c03220 0.82 +0.2
309,306 - PGA1_c03220 0.83 +0.8
309,459 - +0.3
309,460 + +0.1
309,460 + -2.2
309,468 - -1.0
309,468 - +0.6
309,468 - -1.0
309,468 - +0.7
309,515 - +0.9
309,520 - +2.9
309,739 + PGA1_c03230 0.27 +0.7
309,749 + PGA1_c03230 0.29 +2.2
309,782 + PGA1_c03230 0.32 +0.8
309,827 - PGA1_c03230 0.37 +1.2
309,874 - PGA1_c03230 0.42 -0.5
309,927 + PGA1_c03230 0.48 -0.1
309,927 + PGA1_c03230 0.48 +1.7
309,929 + PGA1_c03230 0.49 -0.2
309,929 + PGA1_c03230 0.49 +1.0
309,937 - PGA1_c03230 0.49 +1.1
309,937 - PGA1_c03230 0.49 +1.9
309,937 - PGA1_c03230 0.49 +0.8
309,986 - PGA1_c03230 0.55 +0.0
309,990 + PGA1_c03230 0.55 -0.2
309,990 + PGA1_c03230 0.55 +0.2
309,998 - PGA1_c03230 0.56 -0.7
309,998 - PGA1_c03230 0.56 +1.0
310,026 + PGA1_c03230 0.59 +1.6
310,045 + PGA1_c03230 0.61 +1.2
310,069 + PGA1_c03230 0.64 +1.3
310,153 + PGA1_c03230 0.73 +2.2
310,158 + PGA1_c03230 0.74 +2.2
310,166 - PGA1_c03230 0.75 -2.2
310,299 - PGA1_c03230 0.89 +1.0
310,348 - -1.8
310,440 + -1.8
310,639 + PGA1_c03240 0.29 +1.3
310,675 - PGA1_c03240 0.34 -1.3
310,707 - PGA1_c03240 0.39 -0.2
310,721 - PGA1_c03240 0.41 +2.6
310,811 + PGA1_c03240 0.55 +0.6
310,816 + PGA1_c03240 0.56 +0.2
310,922 + PGA1_c03240 0.73 +1.0
310,971 - PGA1_c03240 0.80 -0.7
310,981 - PGA1_c03240 0.82 +1.5
310,990 + PGA1_c03240 0.83 -0.4
310,998 - PGA1_c03240 0.84 +1.1
311,024 - PGA1_c03240 0.88 -0.7
311,024 - PGA1_c03240 0.88 -0.2
311,049 + +0.1
311,057 - -1.1
311,076 + -0.6
311,099 + +0.2
311,099 + -1.4
311,107 - +0.2
311,107 - -1.5
311,107 - +0.3
311,107 - +0.7
311,107 - -1.7
311,109 + -0.2
311,124 - +1.2
311,179 + PGA1_c03250 0.17 -0.4
311,208 + PGA1_c03250 0.23 -0.2
311,221 - PGA1_c03250 0.26 -0.4
311,270 + PGA1_c03250 0.36 -0.3
311,331 + PGA1_c03250 0.48 +0.6
311,376 + PGA1_c03250 0.57 +1.2

Or see this region's nucleotide sequence