Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14110

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14100 and PGA1_c14110 are separated by 152 nucleotidesPGA1_c14110 and PGA1_c14120 are separated by 271 nucleotides PGA1_c14100: PGA1_c14100 - 3-dehydroquinate synthase AroB, at 1,461,062 to 1,462,189 _c14100 PGA1_c14110: PGA1_c14110 - putative chemoreceptor, at 1,462,342 to 1,464,549 _c14110 PGA1_c14120: PGA1_c14120 - single-stranded DNA-binding protein Ssb, at 1,464,821 to 1,465,363 _c14120 Position (kb) 1462 1463 1464 1465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1462.181 kb on - strandat 1462.191 kb on - strandat 1462.263 kb on + strandat 1462.271 kb on - strandat 1462.271 kb on - strandat 1462.278 kb on - strandat 1462.317 kb on - strandat 1462.328 kb on + strandat 1462.448 kb on - strandat 1462.487 kb on + strandat 1462.505 kb on + strandat 1462.543 kb on + strandat 1462.553 kb on + strandat 1462.553 kb on + strandat 1462.608 kb on + strand, within PGA1_c14110at 1462.608 kb on + strand, within PGA1_c14110at 1462.608 kb on + strand, within PGA1_c14110at 1462.616 kb on - strand, within PGA1_c14110at 1462.618 kb on + strand, within PGA1_c14110at 1462.671 kb on + strand, within PGA1_c14110at 1462.717 kb on + strand, within PGA1_c14110at 1462.727 kb on + strand, within PGA1_c14110at 1462.779 kb on + strand, within PGA1_c14110at 1462.787 kb on - strand, within PGA1_c14110at 1462.873 kb on + strand, within PGA1_c14110at 1462.884 kb on + strand, within PGA1_c14110at 1462.949 kb on + strand, within PGA1_c14110at 1462.949 kb on + strand, within PGA1_c14110at 1463.001 kb on + strand, within PGA1_c14110at 1463.013 kb on + strand, within PGA1_c14110at 1463.019 kb on - strand, within PGA1_c14110at 1463.212 kb on + strand, within PGA1_c14110at 1463.310 kb on - strand, within PGA1_c14110at 1463.323 kb on - strand, within PGA1_c14110at 1463.375 kb on - strand, within PGA1_c14110at 1463.427 kb on + strand, within PGA1_c14110at 1463.436 kb on - strand, within PGA1_c14110at 1463.491 kb on + strand, within PGA1_c14110at 1463.514 kb on + strand, within PGA1_c14110at 1463.517 kb on - strand, within PGA1_c14110at 1463.522 kb on - strand, within PGA1_c14110at 1463.522 kb on - strand, within PGA1_c14110at 1463.522 kb on - strand, within PGA1_c14110at 1463.522 kb on - strand, within PGA1_c14110at 1463.543 kb on - strand, within PGA1_c14110at 1463.579 kb on + strand, within PGA1_c14110at 1463.579 kb on + strand, within PGA1_c14110at 1463.622 kb on + strand, within PGA1_c14110at 1463.674 kb on - strand, within PGA1_c14110at 1463.699 kb on + strand, within PGA1_c14110at 1463.730 kb on + strand, within PGA1_c14110at 1463.750 kb on - strand, within PGA1_c14110at 1463.819 kb on + strand, within PGA1_c14110at 1463.820 kb on - strand, within PGA1_c14110at 1463.820 kb on - strand, within PGA1_c14110at 1463.820 kb on - strand, within PGA1_c14110at 1463.841 kb on + strand, within PGA1_c14110at 1463.841 kb on + strand, within PGA1_c14110at 1463.841 kb on + strand, within PGA1_c14110at 1463.849 kb on - strand, within PGA1_c14110at 1463.857 kb on - strand, within PGA1_c14110at 1463.877 kb on + strand, within PGA1_c14110at 1463.936 kb on + strand, within PGA1_c14110at 1463.936 kb on + strand, within PGA1_c14110at 1463.936 kb on + strand, within PGA1_c14110at 1463.936 kb on + strand, within PGA1_c14110at 1463.943 kb on - strand, within PGA1_c14110at 1463.944 kb on - strand, within PGA1_c14110at 1463.944 kb on - strand, within PGA1_c14110at 1463.944 kb on - strand, within PGA1_c14110at 1464.000 kb on + strand, within PGA1_c14110at 1464.000 kb on + strand, within PGA1_c14110at 1464.074 kb on + strand, within PGA1_c14110at 1464.074 kb on + strand, within PGA1_c14110at 1464.096 kb on + strand, within PGA1_c14110at 1464.152 kb on + strand, within PGA1_c14110at 1464.152 kb on + strand, within PGA1_c14110at 1464.266 kb on + strand, within PGA1_c14110at 1464.296 kb on + strand, within PGA1_c14110at 1464.296 kb on + strand, within PGA1_c14110at 1464.296 kb on + strand, within PGA1_c14110at 1464.303 kb on - strand, within PGA1_c14110at 1464.304 kb on - strand, within PGA1_c14110at 1464.338 kb on + strandat 1464.343 kb on + strandat 1464.346 kb on + strandat 1464.381 kb on + strandat 1464.409 kb on - strandat 1464.424 kb on - strandat 1464.425 kb on - strandat 1464.445 kb on + strandat 1464.453 kb on - strandat 1464.455 kb on + strandat 1464.463 kb on - strandat 1464.463 kb on - strandat 1464.491 kb on - strandat 1464.521 kb on + strandat 1464.535 kb on - strandat 1464.570 kb on - strandat 1464.747 kb on + strandat 1464.753 kb on + strandat 1464.753 kb on + strandat 1464.755 kb on - strandat 1464.761 kb on - strandat 1464.766 kb on + strandat 1464.766 kb on + strandat 1464.766 kb on + strandat 1464.766 kb on - strandat 1464.768 kb on + strandat 1464.768 kb on + strandat 1464.768 kb on + strandat 1464.774 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.776 kb on - strandat 1464.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,462,181 - -0.8
1,462,191 - -3.6
1,462,263 + -0.4
1,462,271 - -0.9
1,462,271 - +1.1
1,462,278 - -0.4
1,462,317 - -0.8
1,462,328 + -2.4
1,462,448 - -0.4
1,462,487 + +0.6
1,462,505 + -1.1
1,462,543 + -1.6
1,462,553 + -0.3
1,462,553 + -1.0
1,462,608 + PGA1_c14110 0.12 -0.9
1,462,608 + PGA1_c14110 0.12 -0.8
1,462,608 + PGA1_c14110 0.12 -2.2
1,462,616 - PGA1_c14110 0.12 -0.4
1,462,618 + PGA1_c14110 0.12 -1.0
1,462,671 + PGA1_c14110 0.15 -0.8
1,462,717 + PGA1_c14110 0.17 -0.8
1,462,727 + PGA1_c14110 0.17 -0.8
1,462,779 + PGA1_c14110 0.20 -1.4
1,462,787 - PGA1_c14110 0.20 -1.0
1,462,873 + PGA1_c14110 0.24 +0.6
1,462,884 + PGA1_c14110 0.25 -0.4
1,462,949 + PGA1_c14110 0.27 -1.0
1,462,949 + PGA1_c14110 0.27 -0.4
1,463,001 + PGA1_c14110 0.30 -1.8
1,463,013 + PGA1_c14110 0.30 -1.8
1,463,019 - PGA1_c14110 0.31 -0.4
1,463,212 + PGA1_c14110 0.39 -0.4
1,463,310 - PGA1_c14110 0.44 +0.6
1,463,323 - PGA1_c14110 0.44 -0.3
1,463,375 - PGA1_c14110 0.47 +0.6
1,463,427 + PGA1_c14110 0.49 -0.0
1,463,436 - PGA1_c14110 0.50 +0.4
1,463,491 + PGA1_c14110 0.52 -1.4
1,463,514 + PGA1_c14110 0.53 -1.0
1,463,517 - PGA1_c14110 0.53 -1.8
1,463,522 - PGA1_c14110 0.53 +1.6
1,463,522 - PGA1_c14110 0.53 +0.6
1,463,522 - PGA1_c14110 0.53 -1.8
1,463,522 - PGA1_c14110 0.53 -1.6
1,463,543 - PGA1_c14110 0.54 +0.6
1,463,579 + PGA1_c14110 0.56 +2.1
1,463,579 + PGA1_c14110 0.56 -1.0
1,463,622 + PGA1_c14110 0.58 -1.6
1,463,674 - PGA1_c14110 0.60 -1.4
1,463,699 + PGA1_c14110 0.61 +0.6
1,463,730 + PGA1_c14110 0.63 -0.9
1,463,750 - PGA1_c14110 0.64 -1.0
1,463,819 + PGA1_c14110 0.67 -0.4
1,463,820 - PGA1_c14110 0.67 -0.8
1,463,820 - PGA1_c14110 0.67 -2.0
1,463,820 - PGA1_c14110 0.67 -1.8
1,463,841 + PGA1_c14110 0.68 -2.0
1,463,841 + PGA1_c14110 0.68 +1.1
1,463,841 + PGA1_c14110 0.68 +0.1
1,463,849 - PGA1_c14110 0.68 -1.0
1,463,857 - PGA1_c14110 0.69 -1.8
1,463,877 + PGA1_c14110 0.70 -0.0
1,463,936 + PGA1_c14110 0.72 -0.8
1,463,936 + PGA1_c14110 0.72 +0.6
1,463,936 + PGA1_c14110 0.72 -0.4
1,463,936 + PGA1_c14110 0.72 -1.8
1,463,943 - PGA1_c14110 0.73 +0.4
1,463,944 - PGA1_c14110 0.73 -1.8
1,463,944 - PGA1_c14110 0.73 -2.0
1,463,944 - PGA1_c14110 0.73 -0.0
1,464,000 + PGA1_c14110 0.75 -1.0
1,464,000 + PGA1_c14110 0.75 -2.0
1,464,074 + PGA1_c14110 0.78 -1.0
1,464,074 + PGA1_c14110 0.78 -0.4
1,464,096 + PGA1_c14110 0.79 -2.8
1,464,152 + PGA1_c14110 0.82 -1.0
1,464,152 + PGA1_c14110 0.82 -1.4
1,464,266 + PGA1_c14110 0.87 -1.8
1,464,296 + PGA1_c14110 0.88 +0.9
1,464,296 + PGA1_c14110 0.88 -0.4
1,464,296 + PGA1_c14110 0.88 -2.4
1,464,303 - PGA1_c14110 0.89 -0.2
1,464,304 - PGA1_c14110 0.89 -2.9
1,464,338 + +1.1
1,464,343 + +0.6
1,464,346 + +0.6
1,464,381 + -0.4
1,464,409 - -1.9
1,464,424 - -2.0
1,464,425 - -0.0
1,464,445 + -1.4
1,464,453 - +0.9
1,464,455 + -1.4
1,464,463 - -0.8
1,464,463 - +0.2
1,464,491 - -0.0
1,464,521 + -1.4
1,464,535 - +0.6
1,464,570 - -0.4
1,464,747 + +0.6
1,464,753 + -0.4
1,464,753 + -2.9
1,464,755 - -1.4
1,464,761 - +1.6
1,464,766 + -0.4
1,464,766 + -2.0
1,464,766 + -1.4
1,464,766 - -0.4
1,464,768 + -2.4
1,464,768 + -2.0
1,464,768 + +2.6
1,464,774 - +0.1
1,464,776 - -3.2
1,464,776 - +0.6
1,464,776 - -1.9
1,464,776 - -2.1
1,464,790 + +0.6

Or see this region's nucleotide sequence