Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14100 and PGA1_c14110 are separated by 152 nucleotides PGA1_c14110 and PGA1_c14120 are separated by 271 nucleotides
PGA1_c14100: PGA1_c14100 - 3-dehydroquinate synthase AroB, at 1,461,062 to 1,462,189
_c14100
PGA1_c14110: PGA1_c14110 - putative chemoreceptor, at 1,462,342 to 1,464,549
_c14110
PGA1_c14120: PGA1_c14120 - single-stranded DNA-binding protein Ssb, at 1,464,821 to 1,465,363
_c14120
Position (kb)
1462
1463
1464
1465 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1462.181 kb on - strand at 1462.191 kb on - strand at 1462.263 kb on + strand at 1462.271 kb on - strand at 1462.271 kb on - strand at 1462.278 kb on - strand at 1462.317 kb on - strand at 1462.328 kb on + strand at 1462.448 kb on - strand at 1462.487 kb on + strand at 1462.505 kb on + strand at 1462.543 kb on + strand at 1462.553 kb on + strand at 1462.553 kb on + strand at 1462.608 kb on + strand, within PGA1_c14110 at 1462.608 kb on + strand, within PGA1_c14110 at 1462.608 kb on + strand, within PGA1_c14110 at 1462.616 kb on - strand, within PGA1_c14110 at 1462.618 kb on + strand, within PGA1_c14110 at 1462.671 kb on + strand, within PGA1_c14110 at 1462.717 kb on + strand, within PGA1_c14110 at 1462.727 kb on + strand, within PGA1_c14110 at 1462.779 kb on + strand, within PGA1_c14110 at 1462.787 kb on - strand, within PGA1_c14110 at 1462.873 kb on + strand, within PGA1_c14110 at 1462.884 kb on + strand, within PGA1_c14110 at 1462.949 kb on + strand, within PGA1_c14110 at 1462.949 kb on + strand, within PGA1_c14110 at 1463.001 kb on + strand, within PGA1_c14110 at 1463.013 kb on + strand, within PGA1_c14110 at 1463.019 kb on - strand, within PGA1_c14110 at 1463.212 kb on + strand, within PGA1_c14110 at 1463.310 kb on - strand, within PGA1_c14110 at 1463.323 kb on - strand, within PGA1_c14110 at 1463.375 kb on - strand, within PGA1_c14110 at 1463.427 kb on + strand, within PGA1_c14110 at 1463.436 kb on - strand, within PGA1_c14110 at 1463.491 kb on + strand, within PGA1_c14110 at 1463.514 kb on + strand, within PGA1_c14110 at 1463.517 kb on - strand, within PGA1_c14110 at 1463.522 kb on - strand, within PGA1_c14110 at 1463.522 kb on - strand, within PGA1_c14110 at 1463.522 kb on - strand, within PGA1_c14110 at 1463.522 kb on - strand, within PGA1_c14110 at 1463.543 kb on - strand, within PGA1_c14110 at 1463.579 kb on + strand, within PGA1_c14110 at 1463.579 kb on + strand, within PGA1_c14110 at 1463.622 kb on + strand, within PGA1_c14110 at 1463.674 kb on - strand, within PGA1_c14110 at 1463.699 kb on + strand, within PGA1_c14110 at 1463.730 kb on + strand, within PGA1_c14110 at 1463.750 kb on - strand, within PGA1_c14110 at 1463.819 kb on + strand, within PGA1_c14110 at 1463.820 kb on - strand, within PGA1_c14110 at 1463.820 kb on - strand, within PGA1_c14110 at 1463.820 kb on - strand, within PGA1_c14110 at 1463.841 kb on + strand, within PGA1_c14110 at 1463.841 kb on + strand, within PGA1_c14110 at 1463.841 kb on + strand, within PGA1_c14110 at 1463.849 kb on - strand, within PGA1_c14110 at 1463.857 kb on - strand, within PGA1_c14110 at 1463.877 kb on + strand, within PGA1_c14110 at 1463.936 kb on + strand, within PGA1_c14110 at 1463.936 kb on + strand, within PGA1_c14110 at 1463.936 kb on + strand, within PGA1_c14110 at 1463.936 kb on + strand, within PGA1_c14110 at 1463.943 kb on - strand, within PGA1_c14110 at 1463.944 kb on - strand, within PGA1_c14110 at 1463.944 kb on - strand, within PGA1_c14110 at 1463.944 kb on - strand, within PGA1_c14110 at 1464.000 kb on + strand, within PGA1_c14110 at 1464.000 kb on + strand, within PGA1_c14110 at 1464.074 kb on + strand, within PGA1_c14110 at 1464.074 kb on + strand, within PGA1_c14110 at 1464.096 kb on + strand, within PGA1_c14110 at 1464.152 kb on + strand, within PGA1_c14110 at 1464.152 kb on + strand, within PGA1_c14110 at 1464.266 kb on + strand, within PGA1_c14110 at 1464.296 kb on + strand, within PGA1_c14110 at 1464.296 kb on + strand, within PGA1_c14110 at 1464.296 kb on + strand, within PGA1_c14110 at 1464.303 kb on - strand, within PGA1_c14110 at 1464.304 kb on - strand, within PGA1_c14110 at 1464.338 kb on + strand at 1464.343 kb on + strand at 1464.346 kb on + strand at 1464.381 kb on + strand at 1464.409 kb on - strand at 1464.424 kb on - strand at 1464.425 kb on - strand at 1464.445 kb on + strand at 1464.453 kb on - strand at 1464.455 kb on + strand at 1464.463 kb on - strand at 1464.463 kb on - strand at 1464.491 kb on - strand at 1464.521 kb on + strand at 1464.535 kb on - strand at 1464.570 kb on - strand at 1464.747 kb on + strand at 1464.753 kb on + strand at 1464.753 kb on + strand at 1464.755 kb on - strand at 1464.761 kb on - strand at 1464.766 kb on + strand at 1464.766 kb on + strand at 1464.766 kb on + strand at 1464.766 kb on - strand at 1464.768 kb on + strand at 1464.768 kb on + strand at 1464.768 kb on + strand at 1464.774 kb on - strand at 1464.776 kb on - strand at 1464.776 kb on - strand at 1464.776 kb on - strand at 1464.776 kb on - strand at 1464.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,462,181 - -0.8 1,462,191 - -3.6 1,462,263 + -0.4 1,462,271 - -0.9 1,462,271 - +1.1 1,462,278 - -0.4 1,462,317 - -0.8 1,462,328 + -2.4 1,462,448 - -0.4 1,462,487 + +0.6 1,462,505 + -1.1 1,462,543 + -1.6 1,462,553 + -0.3 1,462,553 + -1.0 1,462,608 + PGA1_c14110 0.12 -0.9 1,462,608 + PGA1_c14110 0.12 -0.8 1,462,608 + PGA1_c14110 0.12 -2.2 1,462,616 - PGA1_c14110 0.12 -0.4 1,462,618 + PGA1_c14110 0.12 -1.0 1,462,671 + PGA1_c14110 0.15 -0.8 1,462,717 + PGA1_c14110 0.17 -0.8 1,462,727 + PGA1_c14110 0.17 -0.8 1,462,779 + PGA1_c14110 0.20 -1.4 1,462,787 - PGA1_c14110 0.20 -1.0 1,462,873 + PGA1_c14110 0.24 +0.6 1,462,884 + PGA1_c14110 0.25 -0.4 1,462,949 + PGA1_c14110 0.27 -1.0 1,462,949 + PGA1_c14110 0.27 -0.4 1,463,001 + PGA1_c14110 0.30 -1.8 1,463,013 + PGA1_c14110 0.30 -1.8 1,463,019 - PGA1_c14110 0.31 -0.4 1,463,212 + PGA1_c14110 0.39 -0.4 1,463,310 - PGA1_c14110 0.44 +0.6 1,463,323 - PGA1_c14110 0.44 -0.3 1,463,375 - PGA1_c14110 0.47 +0.6 1,463,427 + PGA1_c14110 0.49 -0.0 1,463,436 - PGA1_c14110 0.50 +0.4 1,463,491 + PGA1_c14110 0.52 -1.4 1,463,514 + PGA1_c14110 0.53 -1.0 1,463,517 - PGA1_c14110 0.53 -1.8 1,463,522 - PGA1_c14110 0.53 +1.6 1,463,522 - PGA1_c14110 0.53 +0.6 1,463,522 - PGA1_c14110 0.53 -1.8 1,463,522 - PGA1_c14110 0.53 -1.6 1,463,543 - PGA1_c14110 0.54 +0.6 1,463,579 + PGA1_c14110 0.56 +2.1 1,463,579 + PGA1_c14110 0.56 -1.0 1,463,622 + PGA1_c14110 0.58 -1.6 1,463,674 - PGA1_c14110 0.60 -1.4 1,463,699 + PGA1_c14110 0.61 +0.6 1,463,730 + PGA1_c14110 0.63 -0.9 1,463,750 - PGA1_c14110 0.64 -1.0 1,463,819 + PGA1_c14110 0.67 -0.4 1,463,820 - PGA1_c14110 0.67 -0.8 1,463,820 - PGA1_c14110 0.67 -2.0 1,463,820 - PGA1_c14110 0.67 -1.8 1,463,841 + PGA1_c14110 0.68 -2.0 1,463,841 + PGA1_c14110 0.68 +1.1 1,463,841 + PGA1_c14110 0.68 +0.1 1,463,849 - PGA1_c14110 0.68 -1.0 1,463,857 - PGA1_c14110 0.69 -1.8 1,463,877 + PGA1_c14110 0.70 -0.0 1,463,936 + PGA1_c14110 0.72 -0.8 1,463,936 + PGA1_c14110 0.72 +0.6 1,463,936 + PGA1_c14110 0.72 -0.4 1,463,936 + PGA1_c14110 0.72 -1.8 1,463,943 - PGA1_c14110 0.73 +0.4 1,463,944 - PGA1_c14110 0.73 -1.8 1,463,944 - PGA1_c14110 0.73 -2.0 1,463,944 - PGA1_c14110 0.73 -0.0 1,464,000 + PGA1_c14110 0.75 -1.0 1,464,000 + PGA1_c14110 0.75 -2.0 1,464,074 + PGA1_c14110 0.78 -1.0 1,464,074 + PGA1_c14110 0.78 -0.4 1,464,096 + PGA1_c14110 0.79 -2.8 1,464,152 + PGA1_c14110 0.82 -1.0 1,464,152 + PGA1_c14110 0.82 -1.4 1,464,266 + PGA1_c14110 0.87 -1.8 1,464,296 + PGA1_c14110 0.88 +0.9 1,464,296 + PGA1_c14110 0.88 -0.4 1,464,296 + PGA1_c14110 0.88 -2.4 1,464,303 - PGA1_c14110 0.89 -0.2 1,464,304 - PGA1_c14110 0.89 -2.9 1,464,338 + +1.1 1,464,343 + +0.6 1,464,346 + +0.6 1,464,381 + -0.4 1,464,409 - -1.9 1,464,424 - -2.0 1,464,425 - -0.0 1,464,445 + -1.4 1,464,453 - +0.9 1,464,455 + -1.4 1,464,463 - -0.8 1,464,463 - +0.2 1,464,491 - -0.0 1,464,521 + -1.4 1,464,535 - +0.6 1,464,570 - -0.4 1,464,747 + +0.6 1,464,753 + -0.4 1,464,753 + -2.9 1,464,755 - -1.4 1,464,761 - +1.6 1,464,766 + -0.4 1,464,766 + -2.0 1,464,766 + -1.4 1,464,766 - -0.4 1,464,768 + -2.4 1,464,768 + -2.0 1,464,768 + +2.6 1,464,774 - +0.1 1,464,776 - -3.2 1,464,776 - +0.6 1,464,776 - -1.9 1,464,776 - -2.1 1,464,790 + +0.6
Or see this region's nucleotide sequence