Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0172 and Sama_0173 are separated by 12 nucleotides Sama_0173 and Sama_0174 are separated by 22 nucleotides Sama_0174 and Sama_0175 overlap by 20 nucleotides Sama_0175 and Sama_0176 overlap by 1 nucleotides
Sama_0172: Sama_0172 - general secretion pathway protein G (RefSeq), at 203,196 to 203,627
_0172
Sama_0173: Sama_0173 - general secretion pathway protein H (RefSeq), at 203,640 to 204,209
_0173
Sama_0174: Sama_0174 - general secretion pathway protein I (RefSeq), at 204,232 to 204,597
_0174
Sama_0175: Sama_0175 - general secretion pathway protein J (RefSeq), at 204,578 to 205,357
_0175
Sama_0176: Sama_0176 - general secretion pathway protein K (RefSeq), at 205,357 to 206,331
_0176
Position (kb) 204
205
206 Strain fitness (log2 ratio) -1
0
1 at 203.594 kb on + strand at 203.620 kb on - strand at 203.625 kb on + strand at 203.625 kb on + strand at 203.625 kb on + strand at 203.626 kb on - strand at 203.665 kb on + strand at 203.687 kb on - strand at 203.849 kb on + strand, within Sama_0173 at 203.850 kb on - strand, within Sama_0173 at 203.853 kb on + strand, within Sama_0173 at 203.854 kb on - strand, within Sama_0173 at 203.859 kb on + strand, within Sama_0173 at 203.860 kb on - strand, within Sama_0173 at 203.868 kb on + strand, within Sama_0173 at 203.942 kb on + strand, within Sama_0173 at 204.015 kb on - strand, within Sama_0173 at 204.070 kb on + strand, within Sama_0173 at 204.208 kb on - strand at 204.316 kb on - strand, within Sama_0174 at 204.462 kb on + strand, within Sama_0174 at 204.504 kb on + strand, within Sama_0174 at 204.547 kb on + strand, within Sama_0174 at 204.578 kb on - strand at 204.585 kb on + strand at 204.595 kb on + strand at 204.980 kb on + strand, within Sama_0175 at 205.078 kb on + strand, within Sama_0175 at 205.079 kb on - strand, within Sama_0175 at 205.079 kb on - strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.189 kb on + strand, within Sama_0175 at 205.190 kb on - strand, within Sama_0175 at 205.190 kb on - strand, within Sama_0175 at 205.190 kb on - strand, within Sama_0175 at 205.216 kb on + strand, within Sama_0175 at 205.216 kb on + strand, within Sama_0175 at 205.395 kb on - strand at 205.651 kb on - strand, within Sama_0176 at 205.864 kb on + strand, within Sama_0176 at 205.975 kb on + strand, within Sama_0176 at 205.975 kb on + strand, within Sama_0176 at 205.975 kb on + strand, within Sama_0176 at 205.975 kb on + strand, within Sama_0176 at 205.976 kb on - strand, within Sama_0176 at 206.176 kb on - strand, within Sama_0176 at 206.293 kb on - strand at 206.314 kb on + strand at 206.314 kb on + strand at 206.315 kb on - strand at 206.342 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.349 kb on + strand at 206.355 kb on + strand at 206.355 kb on + strand at 206.355 kb on + strand at 206.355 kb on + strand at 206.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 203,594 + -1.0 203,620 - -0.5 203,625 + +0.4 203,625 + +0.7 203,625 + +0.6 203,626 - +0.3 203,665 + -0.3 203,687 - +1.4 203,849 + Sama_0173 0.37 -1.0 203,850 - Sama_0173 0.37 -0.1 203,853 + Sama_0173 0.37 +0.9 203,854 - Sama_0173 0.38 -0.7 203,859 + Sama_0173 0.38 -0.9 203,860 - Sama_0173 0.39 -1.6 203,868 + Sama_0173 0.40 -0.7 203,942 + Sama_0173 0.53 -1.7 204,015 - Sama_0173 0.66 -0.7 204,070 + Sama_0173 0.75 -0.5 204,208 - -0.9 204,316 - Sama_0174 0.23 -1.3 204,462 + Sama_0174 0.63 -0.1 204,504 + Sama_0174 0.74 -1.2 204,547 + Sama_0174 0.86 +0.3 204,578 - +0.9 204,585 + +0.2 204,595 + -0.8 204,980 + Sama_0175 0.52 -1.1 205,078 + Sama_0175 0.64 -0.1 205,079 - Sama_0175 0.64 +0.3 205,079 - Sama_0175 0.64 -1.3 205,189 + Sama_0175 0.78 -1.7 205,189 + Sama_0175 0.78 -1.5 205,189 + Sama_0175 0.78 -0.6 205,189 + Sama_0175 0.78 -0.1 205,189 + Sama_0175 0.78 +0.6 205,189 + Sama_0175 0.78 +1.1 205,189 + Sama_0175 0.78 -0.0 205,190 - Sama_0175 0.78 -0.1 205,190 - Sama_0175 0.78 -1.7 205,190 - Sama_0175 0.78 -0.3 205,216 + Sama_0175 0.82 -0.1 205,216 + Sama_0175 0.82 -0.9 205,395 - -0.1 205,651 - Sama_0176 0.30 +0.1 205,864 + Sama_0176 0.52 -0.9 205,975 + Sama_0176 0.63 -1.0 205,975 + Sama_0176 0.63 -0.1 205,975 + Sama_0176 0.63 +0.3 205,975 + Sama_0176 0.63 -1.3 205,976 - Sama_0176 0.63 -0.4 206,176 - Sama_0176 0.84 -0.3 206,293 - -0.5 206,314 + -1.3 206,314 + +1.1 206,315 - +0.3 206,342 + +0.1 206,349 + -0.1 206,349 + +0.8 206,349 + +0.8 206,349 + +0.7 206,349 + -0.5 206,349 + -0.1 206,349 + +0.4 206,355 + +1.4 206,355 + -0.8 206,355 + +0.5 206,355 + +0.1 206,355 + +0.6
Or see this region's nucleotide sequence