Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08570 and PGA1_c08580 are separated by 93 nucleotides PGA1_c08580 and PGA1_c08590 are separated by 94 nucleotides PGA1_c08590 and PGA1_c08600 overlap by 1 nucleotides
PGA1_c08570: PGA1_c08570 - putative trimethylamine methyltransferase, at 883,514 to 885,073
_c08570
PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957
_c08580
PGA1_c08590: PGA1_c08590 - heme NO binding domain-containing protein, at 887,052 to 887,639
_c08590
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 884.180 kb on + strand, within PGA1_c08570 at 884.182 kb on + strand, within PGA1_c08570 at 884.188 kb on - strand, within PGA1_c08570 at 884.301 kb on - strand, within PGA1_c08570 at 884.328 kb on - strand, within PGA1_c08570 at 884.355 kb on - strand, within PGA1_c08570 at 884.398 kb on + strand, within PGA1_c08570 at 884.515 kb on - strand, within PGA1_c08570 at 884.543 kb on - strand, within PGA1_c08570 at 884.556 kb on + strand, within PGA1_c08570 at 884.640 kb on - strand, within PGA1_c08570 at 884.796 kb on + strand, within PGA1_c08570 at 884.852 kb on + strand, within PGA1_c08570 at 884.860 kb on - strand, within PGA1_c08570 at 884.860 kb on - strand, within PGA1_c08570 at 884.862 kb on - strand, within PGA1_c08570 at 884.875 kb on + strand, within PGA1_c08570 at 884.875 kb on + strand, within PGA1_c08570 at 884.905 kb on + strand, within PGA1_c08570 at 884.906 kb on - strand, within PGA1_c08570 at 884.963 kb on - strand at 884.975 kb on - strand at 884.991 kb on + strand at 885.079 kb on + strand at 885.099 kb on + strand at 885.099 kb on + strand at 885.130 kb on + strand at 885.136 kb on - strand at 885.138 kb on - strand at 885.138 kb on - strand at 885.283 kb on + strand at 885.487 kb on - strand, within PGA1_c08580 at 885.618 kb on + strand, within PGA1_c08580 at 885.632 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.826 kb on + strand, within PGA1_c08580 at 885.917 kb on - strand, within PGA1_c08580 at 885.947 kb on + strand, within PGA1_c08580 at 885.947 kb on + strand, within PGA1_c08580 at 885.952 kb on + strand, within PGA1_c08580 at 885.957 kb on + strand, within PGA1_c08580 at 885.960 kb on - strand, within PGA1_c08580 at 885.960 kb on - strand, within PGA1_c08580 at 885.965 kb on - strand, within PGA1_c08580 at 885.965 kb on - strand, within PGA1_c08580 at 886.061 kb on + strand, within PGA1_c08580 at 886.069 kb on - strand, within PGA1_c08580 at 886.097 kb on + strand, within PGA1_c08580 at 886.147 kb on + strand, within PGA1_c08580 at 886.243 kb on + strand, within PGA1_c08580 at 886.249 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.377 kb on + strand, within PGA1_c08580 at 886.435 kb on + strand, within PGA1_c08580 at 886.443 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.542 kb on + strand, within PGA1_c08580 at 886.553 kb on + strand, within PGA1_c08580 at 886.559 kb on + strand, within PGA1_c08580 at 886.689 kb on + strand, within PGA1_c08580 at 886.697 kb on - strand, within PGA1_c08580 at 886.741 kb on - strand, within PGA1_c08580 at 886.748 kb on + strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.775 kb on + strand, within PGA1_c08580 at 886.785 kb on + strand at 886.785 kb on + strand at 886.793 kb on + strand at 886.793 kb on - strand at 886.793 kb on - strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on - strand at 886.819 kb on + strand at 886.827 kb on - strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.887 kb on - strand at 886.897 kb on + strand at 886.917 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.940 kb on + strand at 886.940 kb on - strand at 886.940 kb on - strand at 886.945 kb on + strand at 886.947 kb on - strand at 886.950 kb on + strand at 886.951 kb on + strand at 886.953 kb on + strand at 886.953 kb on - strand at 886.959 kb on - strand at 886.966 kb on - strand at 887.010 kb on - strand at 887.010 kb on - strand at 887.025 kb on - strand at 887.032 kb on + strand at 887.049 kb on + strand at 887.052 kb on - strand at 887.057 kb on - strand at 887.063 kb on + strand at 887.076 kb on + strand at 887.131 kb on + strand, within PGA1_c08590 at 887.171 kb on + strand, within PGA1_c08590 at 887.179 kb on + strand, within PGA1_c08590 at 887.184 kb on - strand, within PGA1_c08590 at 887.217 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.293 kb on - strand, within PGA1_c08590 at 887.376 kb on - strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.489 kb on + strand, within PGA1_c08590 at 887.513 kb on - strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.560 kb on - strand, within PGA1_c08590 at 887.564 kb on + strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.572 kb on - strand, within PGA1_c08590 at 887.578 kb on + strand, within PGA1_c08590 at 887.619 kb on - strand at 887.634 kb on + strand at 887.646 kb on - strand at 887.810 kb on + strand, within PGA1_c08600 at 887.814 kb on - strand, within PGA1_c08600 at 887.818 kb on - strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.858 kb on - strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.931 kb on - strand, within PGA1_c08600
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 884,180 + PGA1_c08570 0.43 -0.1 884,182 + PGA1_c08570 0.43 +2.4 884,188 - PGA1_c08570 0.43 -1.0 884,301 - PGA1_c08570 0.50 +0.6 884,328 - PGA1_c08570 0.52 +0.6 884,355 - PGA1_c08570 0.54 +0.5 884,398 + PGA1_c08570 0.57 +0.4 884,515 - PGA1_c08570 0.64 +0.5 884,543 - PGA1_c08570 0.66 +0.8 884,556 + PGA1_c08570 0.67 -1.6 884,640 - PGA1_c08570 0.72 -0.5 884,796 + PGA1_c08570 0.82 -0.4 884,852 + PGA1_c08570 0.86 -1.1 884,860 - PGA1_c08570 0.86 -0.1 884,860 - PGA1_c08570 0.86 +0.6 884,862 - PGA1_c08570 0.86 +1.8 884,875 + PGA1_c08570 0.87 +1.5 884,875 + PGA1_c08570 0.87 +0.0 884,905 + PGA1_c08570 0.89 +0.2 884,906 - PGA1_c08570 0.89 +0.9 884,963 - -0.4 884,975 - -0.1 884,991 + +2.8 885,079 + -1.2 885,099 + -0.1 885,099 + +0.1 885,130 + -0.3 885,136 - +1.0 885,138 - -0.4 885,138 - -0.4 885,283 + -1.9 885,487 - PGA1_c08580 0.18 -0.7 885,618 + PGA1_c08580 0.25 +1.2 885,632 + PGA1_c08580 0.26 -2.7 885,652 + PGA1_c08580 0.27 -0.2 885,652 + PGA1_c08580 0.27 +0.2 885,652 + PGA1_c08580 0.27 +0.2 885,826 + PGA1_c08580 0.37 -2.7 885,917 - PGA1_c08580 0.42 -0.7 885,947 + PGA1_c08580 0.44 -1.8 885,947 + PGA1_c08580 0.44 +0.3 885,952 + PGA1_c08580 0.44 -2.5 885,957 + PGA1_c08580 0.44 -0.1 885,960 - PGA1_c08580 0.44 -0.4 885,960 - PGA1_c08580 0.44 +2.1 885,965 - PGA1_c08580 0.45 +0.3 885,965 - PGA1_c08580 0.45 +0.7 886,061 + PGA1_c08580 0.50 +0.4 886,069 - PGA1_c08580 0.50 -0.8 886,097 + PGA1_c08580 0.52 +1.0 886,147 + PGA1_c08580 0.55 -0.8 886,243 + PGA1_c08580 0.60 -0.3 886,249 + PGA1_c08580 0.60 +0.2 886,355 + PGA1_c08580 0.66 -0.7 886,355 + PGA1_c08580 0.66 +1.2 886,377 + PGA1_c08580 0.68 -0.5 886,435 + PGA1_c08580 0.71 -0.1 886,443 - PGA1_c08580 0.71 -1.7 886,502 - PGA1_c08580 0.75 +0.1 886,502 - PGA1_c08580 0.75 -0.5 886,542 + PGA1_c08580 0.77 +0.6 886,553 + PGA1_c08580 0.77 -1.3 886,559 + PGA1_c08580 0.78 +0.2 886,689 + PGA1_c08580 0.85 +0.2 886,697 - PGA1_c08580 0.85 -0.7 886,741 - PGA1_c08580 0.88 -2.8 886,748 + PGA1_c08580 0.88 -0.2 886,756 - PGA1_c08580 0.89 -0.1 886,756 - PGA1_c08580 0.89 -0.3 886,758 + PGA1_c08580 0.89 +0.5 886,758 + PGA1_c08580 0.89 +1.1 886,758 + PGA1_c08580 0.89 -2.2 886,775 + PGA1_c08580 0.90 +1.0 886,785 + +1.4 886,785 + -2.1 886,793 + +2.2 886,793 - +1.1 886,793 - -1.6 886,801 - -2.6 886,801 - -0.7 886,811 - +1.6 886,819 + +0.8 886,827 - -1.2 886,852 + +0.3 886,852 + +0.7 886,852 + +1.8 886,852 + -1.0 886,852 + +2.2 886,852 + +1.8 886,852 + -0.2 886,852 + +1.2 886,852 + -1.1 886,852 + -2.6 886,852 + +0.8 886,860 - +0.7 886,860 - +0.2 886,860 - +2.9 886,860 - -0.0 886,860 - +1.2 886,860 - +1.0 886,860 - +2.2 886,860 - -0.3 886,860 - +0.7 886,887 - +1.2 886,897 + -0.5 886,917 + +0.8 886,932 + +0.1 886,932 + -0.2 886,932 + -3.1 886,932 + -0.3 886,940 + -1.6 886,940 - -0.7 886,940 - -0.1 886,945 + +1.0 886,947 - +1.0 886,950 + +0.6 886,951 + +1.1 886,953 + +0.2 886,953 - +0.2 886,959 - -1.0 886,966 - +1.4 887,010 - +0.6 887,010 - +1.0 887,025 - -1.8 887,032 + +1.8 887,049 + +0.8 887,052 - -1.1 887,057 - +0.6 887,063 + -0.9 887,076 + +0.1 887,131 + PGA1_c08590 0.13 -0.1 887,171 + PGA1_c08590 0.20 +0.7 887,179 + PGA1_c08590 0.22 -2.1 887,184 - PGA1_c08590 0.22 +1.0 887,217 - PGA1_c08590 0.28 +0.6 887,219 - PGA1_c08590 0.28 +2.5 887,219 - PGA1_c08590 0.28 +1.0 887,219 - PGA1_c08590 0.28 +0.3 887,293 - PGA1_c08590 0.41 +2.4 887,376 - PGA1_c08590 0.55 +1.1 887,388 + PGA1_c08590 0.57 +1.3 887,388 + PGA1_c08590 0.57 +1.2 887,396 - PGA1_c08590 0.59 -0.3 887,396 - PGA1_c08590 0.59 +0.5 887,396 - PGA1_c08590 0.59 -3.0 887,396 - PGA1_c08590 0.59 +1.2 887,466 + PGA1_c08590 0.70 -0.8 887,466 + PGA1_c08590 0.70 +0.7 887,489 + PGA1_c08590 0.74 +0.5 887,513 - PGA1_c08590 0.78 -2.8 887,552 + PGA1_c08590 0.85 +0.0 887,552 + PGA1_c08590 0.85 -1.0 887,555 - PGA1_c08590 0.86 +1.7 887,555 - PGA1_c08590 0.86 +0.7 887,557 + PGA1_c08590 0.86 +1.5 887,557 + PGA1_c08590 0.86 +0.8 887,557 + PGA1_c08590 0.86 +1.2 887,557 + PGA1_c08590 0.86 +1.6 887,557 + PGA1_c08590 0.86 +0.8 887,557 + PGA1_c08590 0.86 -2.6 887,560 - PGA1_c08590 0.86 +0.3 887,564 + PGA1_c08590 0.87 +0.7 887,565 - PGA1_c08590 0.87 +0.9 887,565 - PGA1_c08590 0.87 -0.8 887,565 - PGA1_c08590 0.87 +0.6 887,572 - PGA1_c08590 0.88 -1.6 887,578 + PGA1_c08590 0.89 +2.5 887,619 - -0.5 887,634 + -0.0 887,646 - +0.7 887,810 + PGA1_c08600 0.17 +0.6 887,814 - PGA1_c08600 0.17 +0.3 887,818 - PGA1_c08600 0.18 -0.6 887,836 + PGA1_c08600 0.20 +0.3 887,836 + PGA1_c08600 0.20 +0.5 887,836 + PGA1_c08600 0.20 +1.3 887,836 + PGA1_c08600 0.20 +1.1 887,844 - PGA1_c08600 0.20 +2.7 887,844 - PGA1_c08600 0.20 +0.7 887,844 - PGA1_c08600 0.20 -2.4 887,858 - PGA1_c08600 0.22 +1.2 887,923 + PGA1_c08600 0.28 +2.7 887,923 + PGA1_c08600 0.28 -1.6 887,931 - PGA1_c08600 0.29 +0.7
Or see this region's nucleotide sequence