Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07970 and PGA1_c07980 are separated by 46 nucleotides PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides PGA1_c07990 and PGA1_c08000 are separated by 44 nucleotides
PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187
_c07970
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
PGA1_c08000: PGA1_c08000 - DNA polymerase III, gamma/tau subunits, at 829,897 to 831,018
_c08000
Position (kb) 829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 828.119 kb on + strand at 828.281 kb on + strand at 828.281 kb on + strand at 828.296 kb on - strand at 828.348 kb on + strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.417 kb on + strand, within PGA1_c07980 at 828.529 kb on - strand, within PGA1_c07980 at 828.530 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.628 kb on - strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.654 kb on - strand, within PGA1_c07980 at 828.763 kb on + strand, within PGA1_c07980 at 828.793 kb on + strand, within PGA1_c07980 at 828.800 kb on - strand, within PGA1_c07980 at 828.884 kb on + strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990 at 829.201 kb on + strand, within PGA1_c07990 at 829.264 kb on + strand, within PGA1_c07990 at 829.272 kb on - strand, within PGA1_c07990 at 829.315 kb on - strand, within PGA1_c07990 at 829.326 kb on - strand, within PGA1_c07990 at 829.499 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.525 kb on - strand, within PGA1_c07990 at 829.544 kb on + strand, within PGA1_c07990 at 829.636 kb on - strand, within PGA1_c07990 at 829.681 kb on + strand, within PGA1_c07990 at 829.723 kb on - strand, within PGA1_c07990 at 829.747 kb on - strand, within PGA1_c07990 at 829.801 kb on + strand at 829.857 kb on + strand at 829.872 kb on - strand at 829.898 kb on - strand at 829.912 kb on + strand at 829.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 828,119 + +0.4 828,281 + +0.5 828,281 + +1.5 828,296 - +0.7 828,348 + PGA1_c07980 0.14 -1.1 828,356 - PGA1_c07980 0.15 +0.2 828,356 - PGA1_c07980 0.15 +0.6 828,417 + PGA1_c07980 0.23 -1.1 828,529 - PGA1_c07980 0.37 +1.2 828,530 + PGA1_c07980 0.37 -1.1 828,620 + PGA1_c07980 0.48 -1.0 828,620 + PGA1_c07980 0.48 +2.6 828,628 - PGA1_c07980 0.49 -0.3 828,635 + PGA1_c07980 0.50 -0.6 828,635 + PGA1_c07980 0.50 +2.8 828,654 - PGA1_c07980 0.53 +0.7 828,763 + PGA1_c07980 0.66 -1.0 828,793 + PGA1_c07980 0.70 +0.7 828,800 - PGA1_c07980 0.71 +2.2 828,884 + PGA1_c07980 0.81 -1.3 828,892 - PGA1_c07980 0.82 -0.3 828,892 - PGA1_c07980 0.82 -2.5 828,892 - PGA1_c07980 0.82 -2.8 828,892 - PGA1_c07980 0.82 +1.2 828,938 - PGA1_c07980 0.88 -2.3 828,991 - -3.1 828,994 - -1.2 829,035 - +0.2 829,134 - PGA1_c07990 0.13 -0.6 829,150 - PGA1_c07990 0.14 +1.1 829,155 + PGA1_c07990 0.15 -1.7 829,155 + PGA1_c07990 0.15 +0.2 829,163 - PGA1_c07990 0.16 -0.5 829,201 + PGA1_c07990 0.21 -0.6 829,264 + PGA1_c07990 0.28 +0.0 829,272 - PGA1_c07990 0.29 -2.1 829,315 - PGA1_c07990 0.35 -2.5 829,326 - PGA1_c07990 0.36 -1.1 829,499 + PGA1_c07990 0.57 -1.1 829,507 + PGA1_c07990 0.58 -1.1 829,507 + PGA1_c07990 0.58 -0.6 829,515 - PGA1_c07990 0.59 -2.1 829,515 - PGA1_c07990 0.59 +0.1 829,525 - PGA1_c07990 0.60 -1.3 829,544 + PGA1_c07990 0.62 +0.2 829,636 - PGA1_c07990 0.74 -0.1 829,681 + PGA1_c07990 0.79 -1.6 829,723 - PGA1_c07990 0.84 -0.3 829,747 - PGA1_c07990 0.87 +0.1 829,801 + +0.0 829,857 + -0.3 829,872 - -1.6 829,898 - +0.4 829,912 + -0.8 829,912 + -2.3
Or see this region's nucleotide sequence