Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06540 and PGA1_c06550 are separated by 22 nucleotides PGA1_c06550 and PGA1_c06560 are separated by 82 nucleotides
PGA1_c06540: PGA1_c06540 - dihydropteroate synthase FolP, at 672,070 to 673,011
_c06540
PGA1_c06550: PGA1_c06550 - phosphoglucosamine mutase GlmM, at 673,034 to 674,380
_c06550
PGA1_c06560: PGA1_c06560 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 674,463 to 675,371
_c06560
Position (kb) 673
674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 674.415 kb on - strand at 674.430 kb on - strand at 674.476 kb on + strand at 674.645 kb on - strand, within PGA1_c06560 at 674.647 kb on + strand, within PGA1_c06560 at 674.647 kb on + strand, within PGA1_c06560 at 674.663 kb on - strand, within PGA1_c06560 at 674.689 kb on + strand, within PGA1_c06560 at 674.697 kb on - strand, within PGA1_c06560 at 674.708 kb on - strand, within PGA1_c06560 at 674.721 kb on - strand, within PGA1_c06560 at 674.731 kb on - strand, within PGA1_c06560 at 674.860 kb on - strand, within PGA1_c06560 at 674.882 kb on + strand, within PGA1_c06560 at 674.915 kb on - strand, within PGA1_c06560 at 674.915 kb on - strand, within PGA1_c06560 at 674.941 kb on + strand, within PGA1_c06560 at 675.021 kb on + strand, within PGA1_c06560 at 675.027 kb on - strand, within PGA1_c06560 at 675.028 kb on - strand, within PGA1_c06560 at 675.117 kb on - strand, within PGA1_c06560 at 675.134 kb on - strand, within PGA1_c06560 at 675.134 kb on - strand, within PGA1_c06560 at 675.182 kb on - strand, within PGA1_c06560 at 675.191 kb on + strand, within PGA1_c06560 at 675.212 kb on + strand, within PGA1_c06560 at 675.212 kb on + strand, within PGA1_c06560 at 675.220 kb on - strand, within PGA1_c06560 at 675.222 kb on + strand, within PGA1_c06560 at 675.230 kb on - strand, within PGA1_c06560 at 675.230 kb on - strand, within PGA1_c06560 at 675.267 kb on - strand, within PGA1_c06560 at 675.269 kb on + strand, within PGA1_c06560 at 675.269 kb on + strand, within PGA1_c06560 at 675.277 kb on - strand, within PGA1_c06560 at 675.279 kb on + strand, within PGA1_c06560 at 675.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 674,415 - -0.2 674,430 - +0.3 674,476 + +2.0 674,645 - PGA1_c06560 0.20 +0.4 674,647 + PGA1_c06560 0.20 -0.2 674,647 + PGA1_c06560 0.20 +1.9 674,663 - PGA1_c06560 0.22 -0.8 674,689 + PGA1_c06560 0.25 -0.2 674,697 - PGA1_c06560 0.26 +0.5 674,708 - PGA1_c06560 0.27 +0.0 674,721 - PGA1_c06560 0.28 -0.1 674,731 - PGA1_c06560 0.29 -2.0 674,860 - PGA1_c06560 0.44 -1.0 674,882 + PGA1_c06560 0.46 -2.2 674,915 - PGA1_c06560 0.50 +1.4 674,915 - PGA1_c06560 0.50 +0.7 674,941 + PGA1_c06560 0.53 -0.2 675,021 + PGA1_c06560 0.61 +1.3 675,027 - PGA1_c06560 0.62 -3.3 675,028 - PGA1_c06560 0.62 +0.5 675,117 - PGA1_c06560 0.72 -0.4 675,134 - PGA1_c06560 0.74 +0.9 675,134 - PGA1_c06560 0.74 -1.4 675,182 - PGA1_c06560 0.79 -1.3 675,191 + PGA1_c06560 0.80 -1.6 675,212 + PGA1_c06560 0.82 +0.9 675,212 + PGA1_c06560 0.82 +0.5 675,220 - PGA1_c06560 0.83 -1.1 675,222 + PGA1_c06560 0.83 +0.9 675,230 - PGA1_c06560 0.84 -2.2 675,230 - PGA1_c06560 0.84 +1.0 675,267 - PGA1_c06560 0.88 -0.4 675,269 + PGA1_c06560 0.89 +0.5 675,269 + PGA1_c06560 0.89 -0.2 675,277 - PGA1_c06560 0.90 +0.5 675,279 + PGA1_c06560 0.90 +1.9 675,349 - +0.4
Or see this region's nucleotide sequence