Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06320 and PGA1_c06330 overlap by 1 nucleotides PGA1_c06330 and PGA1_c06340 are separated by 63 nucleotides
PGA1_c06320: PGA1_c06320 - peptidase, M16 family, at 646,761 to 648,023
_c06320
PGA1_c06330: PGA1_c06330 - putative ribosomal-protein-alanine acetyltransferase, at 648,023 to 648,613
_c06330
PGA1_c06340: PGA1_c06340 - putative FAD linked oxidase, at 648,677 to 650,101
_c06340
Position (kb) 648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 647.029 kb on + strand, within PGA1_c06320 at 647.133 kb on - strand, within PGA1_c06320 at 647.279 kb on - strand, within PGA1_c06320 at 647.282 kb on + strand, within PGA1_c06320 at 647.383 kb on - strand, within PGA1_c06320 at 647.426 kb on + strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.541 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.608 kb on - strand, within PGA1_c06320 at 647.621 kb on + strand, within PGA1_c06320 at 647.624 kb on - strand, within PGA1_c06320 at 647.630 kb on - strand, within PGA1_c06320 at 647.659 kb on + strand, within PGA1_c06320 at 647.843 kb on + strand, within PGA1_c06320 at 647.885 kb on + strand, within PGA1_c06320 at 647.923 kb on - strand at 647.935 kb on - strand at 648.018 kb on + strand at 648.143 kb on - strand, within PGA1_c06330 at 648.178 kb on - strand, within PGA1_c06330 at 648.199 kb on + strand, within PGA1_c06330 at 648.225 kb on + strand, within PGA1_c06330 at 648.225 kb on + strand, within PGA1_c06330 at 648.291 kb on + strand, within PGA1_c06330 at 648.338 kb on - strand, within PGA1_c06330 at 648.338 kb on - strand, within PGA1_c06330 at 648.441 kb on - strand, within PGA1_c06330 at 648.476 kb on + strand, within PGA1_c06330 at 648.486 kb on - strand, within PGA1_c06330 at 648.596 kb on - strand at 648.607 kb on + strand at 648.624 kb on + strand at 648.646 kb on + strand at 648.680 kb on + strand at 648.680 kb on + strand at 648.688 kb on - strand at 648.688 kb on - strand at 648.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 647,029 + PGA1_c06320 0.21 -1.9 647,133 - PGA1_c06320 0.29 -0.2 647,279 - PGA1_c06320 0.41 +1.6 647,282 + PGA1_c06320 0.41 -0.4 647,383 - PGA1_c06320 0.49 -1.6 647,426 + PGA1_c06320 0.53 -1.2 647,521 - PGA1_c06320 0.60 +1.0 647,521 - PGA1_c06320 0.60 -1.2 647,541 + PGA1_c06320 0.62 -0.6 647,600 + PGA1_c06320 0.66 -0.9 647,600 + PGA1_c06320 0.66 +0.4 647,608 - PGA1_c06320 0.67 -2.1 647,621 + PGA1_c06320 0.68 -2.1 647,624 - PGA1_c06320 0.68 -0.9 647,630 - PGA1_c06320 0.69 -2.3 647,659 + PGA1_c06320 0.71 -0.5 647,843 + PGA1_c06320 0.86 -2.6 647,885 + PGA1_c06320 0.89 -1.0 647,923 - +1.4 647,935 - -0.1 648,018 + +0.2 648,143 - PGA1_c06330 0.20 -1.4 648,178 - PGA1_c06330 0.26 -2.4 648,199 + PGA1_c06330 0.30 +1.8 648,225 + PGA1_c06330 0.34 +1.6 648,225 + PGA1_c06330 0.34 +0.6 648,291 + PGA1_c06330 0.45 -2.7 648,338 - PGA1_c06330 0.53 -2.3 648,338 - PGA1_c06330 0.53 -0.1 648,441 - PGA1_c06330 0.71 -0.1 648,476 + PGA1_c06330 0.77 +0.6 648,486 - PGA1_c06330 0.78 +0.1 648,596 - -1.7 648,607 + -0.8 648,624 + -2.4 648,646 + +0.2 648,680 + +0.6 648,680 + -0.6 648,688 - -0.9 648,688 - -3.2 648,688 - -1.2
Or see this region's nucleotide sequence