Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06290 and PGA1_c06300 are separated by 118 nucleotides PGA1_c06300 and PGA1_c06310 are separated by 4 nucleotides PGA1_c06310 and PGA1_c06320 overlap by 4 nucleotides
PGA1_c06290: PGA1_c06290 - cytochrome c oxidase subunit 3, at 643,763 to 644,578
_c06290
PGA1_c06300: PGA1_c06300 - Uncharacterized conserved protein, at 644,697 to 645,371
_c06300
PGA1_c06310: PGA1_c06310 - threonine synthase ThrC, at 645,376 to 646,764
_c06310
PGA1_c06320: PGA1_c06320 - peptidase, M16 family, at 646,761 to 648,023
_c06320
Position (kb) 645
646
647 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.593 kb on - strand at 644.598 kb on + strand at 644.605 kb on + strand at 644.606 kb on - strand at 644.655 kb on + strand at 644.655 kb on + strand at 646.799 kb on - strand at 646.823 kb on + strand at 647.029 kb on + strand, within PGA1_c06320 at 647.133 kb on - strand, within PGA1_c06320 at 647.279 kb on - strand, within PGA1_c06320 at 647.282 kb on + strand, within PGA1_c06320 at 647.383 kb on - strand, within PGA1_c06320 at 647.426 kb on + strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.521 kb on - strand, within PGA1_c06320 at 647.541 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.600 kb on + strand, within PGA1_c06320 at 647.608 kb on - strand, within PGA1_c06320 at 647.621 kb on + strand, within PGA1_c06320 at 647.624 kb on - strand, within PGA1_c06320 at 647.630 kb on - strand, within PGA1_c06320 at 647.659 kb on + strand, within PGA1_c06320
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 644,593 - +1.7 644,598 + +1.0 644,605 + +1.9 644,606 - -0.7 644,655 + +1.1 644,655 + -1.4 646,799 - +0.8 646,823 + +0.7 647,029 + PGA1_c06320 0.21 -1.9 647,133 - PGA1_c06320 0.29 -0.2 647,279 - PGA1_c06320 0.41 +1.6 647,282 + PGA1_c06320 0.41 -0.4 647,383 - PGA1_c06320 0.49 -1.6 647,426 + PGA1_c06320 0.53 -1.2 647,521 - PGA1_c06320 0.60 +1.0 647,521 - PGA1_c06320 0.60 -1.2 647,541 + PGA1_c06320 0.62 -0.6 647,600 + PGA1_c06320 0.66 -0.9 647,600 + PGA1_c06320 0.66 +0.4 647,608 - PGA1_c06320 0.67 -2.1 647,621 + PGA1_c06320 0.68 -2.1 647,624 - PGA1_c06320 0.68 -0.9 647,630 - PGA1_c06320 0.69 -2.3 647,659 + PGA1_c06320 0.71 -0.5
Or see this region's nucleotide sequence