Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05710 and PGA1_c05720 are separated by 193 nucleotides PGA1_c05720 and PGA1_c05730 are separated by 216 nucleotides PGA1_c05730 and PGA1_c05740 are separated by 228 nucleotides
PGA1_c05710: PGA1_c05710 - isoleucyl-tRNA synthetase IleS, at 584,015 to 586,945
_c05710
PGA1_c05720: PGA1_c05720 - hypothetical protein, at 587,139 to 587,483
_c05720
PGA1_c05730: PGA1_c05730 - putative methylated-DNA--protein-cysteine methyltransferase, at 587,700 to 588,188
_c05730
PGA1_c05740: PGA1_c05740 - phosphatidylcholine synthase Pcs, at 588,417 to 589,112
_c05740
Position (kb) 587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 587.103 kb on + strand at 587.108 kb on + strand at 587.231 kb on + strand, within PGA1_c05720 at 587.246 kb on + strand, within PGA1_c05720 at 587.259 kb on - strand, within PGA1_c05720 at 587.368 kb on + strand, within PGA1_c05720 at 587.384 kb on - strand, within PGA1_c05720 at 587.415 kb on + strand, within PGA1_c05720 at 587.423 kb on - strand, within PGA1_c05720 at 587.478 kb on - strand at 587.548 kb on + strand at 587.550 kb on + strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.575 kb on + strand at 587.637 kb on + strand at 587.645 kb on - strand at 587.645 kb on - strand at 587.666 kb on - strand at 587.671 kb on - strand at 587.690 kb on + strand at 587.773 kb on - strand, within PGA1_c05730 at 587.783 kb on - strand, within PGA1_c05730 at 588.049 kb on - strand, within PGA1_c05730 at 588.079 kb on + strand, within PGA1_c05730 at 588.203 kb on + strand at 588.216 kb on + strand at 588.224 kb on - strand at 588.234 kb on - strand at 588.391 kb on + strand at 588.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 587,103 + -2.3 587,108 + -1.6 587,231 + PGA1_c05720 0.27 -0.9 587,246 + PGA1_c05720 0.31 +2.2 587,259 - PGA1_c05720 0.35 -0.0 587,368 + PGA1_c05720 0.66 +1.8 587,384 - PGA1_c05720 0.71 +0.7 587,415 + PGA1_c05720 0.80 +0.3 587,423 - PGA1_c05720 0.82 +0.8 587,478 - +0.9 587,548 + +1.2 587,550 + -1.6 587,556 - -2.8 587,556 - -2.0 587,556 - -1.2 587,556 - +0.7 587,575 + -0.2 587,637 + -0.9 587,645 - -0.6 587,645 - -2.6 587,666 - -0.5 587,671 - +2.0 587,690 + -0.6 587,773 - PGA1_c05730 0.15 -0.0 587,783 - PGA1_c05730 0.17 +2.0 588,049 - PGA1_c05730 0.71 -0.6 588,079 + PGA1_c05730 0.78 -0.1 588,203 + -0.2 588,216 + -0.9 588,224 - -2.0 588,234 - +0.5 588,391 + -0.6 588,423 - -3.4
Or see this region's nucleotide sequence