Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562
_c05560
Position (kb) 569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 568.242 kb on - strand, within PGA1_c05550 at 568.277 kb on + strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.418 kb on + strand, within PGA1_c05550 at 568.440 kb on - strand at 568.446 kb on - strand at 568.464 kb on + strand at 568.466 kb on + strand at 568.474 kb on + strand at 568.487 kb on + strand at 568.496 kb on - strand at 568.501 kb on + strand at 568.504 kb on - strand at 568.507 kb on + strand at 568.515 kb on - strand at 568.515 kb on - strand at 568.533 kb on + strand at 568.541 kb on - strand at 568.776 kb on + strand at 568.783 kb on + strand at 568.790 kb on - strand at 568.808 kb on + strand at 568.829 kb on + strand at 568.837 kb on - strand at 568.845 kb on + strand at 568.874 kb on - strand at 568.892 kb on + strand at 568.892 kb on + strand at 568.900 kb on - strand at 568.931 kb on + strand at 568.999 kb on - strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.049 kb on + strand at 569.049 kb on + strand at 569.052 kb on - strand at 569.054 kb on + strand at 569.057 kb on - strand at 569.068 kb on + strand at 569.073 kb on + strand at 569.076 kb on - strand at 569.081 kb on - strand at 569.147 kb on + strand at 569.324 kb on + strand, within PGA1_c05560 at 569.366 kb on - strand, within PGA1_c05560 at 569.375 kb on - strand, within PGA1_c05560 at 569.469 kb on - strand, within PGA1_c05560 at 569.490 kb on + strand, within PGA1_c05560 at 569.498 kb on - strand, within PGA1_c05560 at 569.506 kb on - strand, within PGA1_c05560 at 569.573 kb on - strand at 569.652 kb on - strand at 569.739 kb on - strand at 569.880 kb on - strand at 569.964 kb on + strand at 569.972 kb on - strand at 570.030 kb on - strand at 570.034 kb on + strand at 570.041 kb on + strand at 570.071 kb on + strand at 570.071 kb on + strand at 570.076 kb on - strand at 570.079 kb on - strand at 570.171 kb on + strand at 570.236 kb on + strand at 570.249 kb on - strand at 570.285 kb on - strand at 570.308 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.418 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 568,242 - PGA1_c05550 0.77 +1.3 568,277 + PGA1_c05550 0.79 -0.6 568,321 - PGA1_c05550 0.82 -0.6 568,321 - PGA1_c05550 0.82 -1.4 568,418 + PGA1_c05550 0.89 -1.2 568,440 - +0.8 568,446 - +1.4 568,464 + -0.2 568,466 + -0.1 568,474 + +1.8 568,487 + +0.4 568,496 - -2.3 568,501 + +1.1 568,504 - -0.2 568,507 + +1.7 568,515 - -0.2 568,515 - +0.4 568,533 + +3.2 568,541 - +0.4 568,776 + -2.2 568,783 + -1.6 568,790 - +0.6 568,808 + -2.2 568,829 + -1.1 568,837 - -2.2 568,845 + +1.0 568,874 - +1.4 568,892 + +0.4 568,892 + -2.6 568,900 - -1.9 568,931 + +1.2 568,999 - -0.4 569,044 + +0.6 569,044 + -1.9 569,044 + +1.0 569,044 + +1.1 569,049 + +0.4 569,049 + -2.2 569,052 - -1.2 569,054 + -1.2 569,057 - -0.0 569,068 + -2.0 569,073 + +0.2 569,076 - -2.3 569,081 - +0.7 569,147 + +0.6 569,324 + PGA1_c05560 0.34 -1.0 569,366 - PGA1_c05560 0.46 +2.9 569,375 - PGA1_c05560 0.48 -2.7 569,469 - PGA1_c05560 0.74 +1.4 569,490 + PGA1_c05560 0.80 -1.4 569,498 - PGA1_c05560 0.82 -3.1 569,506 - PGA1_c05560 0.84 -2.6 569,573 - -0.9 569,652 - +0.3 569,739 - +0.1 569,880 - -2.7 569,964 + -1.2 569,972 - -0.9 570,030 - +0.7 570,034 + +0.7 570,041 + +2.2 570,071 + -1.2 570,071 + -0.9 570,076 - -0.7 570,079 - -0.6 570,171 + +1.3 570,236 + +0.4 570,249 - +0.1 570,285 - +1.2 570,308 - +0.4 570,331 - +1.9 570,331 - +1.9 570,331 - +0.8 570,418 - -0.5 570,420 - -1.4 570,420 - -0.9 570,420 - -2.4 570,505 + +1.8
Or see this region's nucleotide sequence