Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04770 and PGA1_c04780 are separated by 116 nucleotides PGA1_c04780 and PGA1_c04790 are separated by 165 nucleotides PGA1_c04790 and PGA1_c04800 are separated by 92 nucleotides
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
PGA1_c04780: PGA1_c04780 - S-adenosylmethionine synthetase MetK, at 469,819 to 471,000
_c04780
PGA1_c04790: PGA1_c04790 - Clp protease., at 471,166 to 471,876
_c04790
PGA1_c04800: PGA1_c04800 - tRNA (guanine-N(7)-)-methyltransferase TrmB, at 471,969 to 472,733
_c04800
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 469.685 kb on - strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.703 kb on - strand at 469.703 kb on - strand at 469.711 kb on + strand at 469.744 kb on + strand at 469.795 kb on + strand at 471.033 kb on - strand at 471.047 kb on - strand at 471.097 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.157 kb on - strand at 471.225 kb on - strand at 471.257 kb on - strand, within PGA1_c04790 at 471.268 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.353 kb on + strand, within PGA1_c04790 at 471.353 kb on - strand, within PGA1_c04790 at 471.386 kb on - strand, within PGA1_c04790 at 471.453 kb on - strand, within PGA1_c04790 at 471.455 kb on + strand, within PGA1_c04790 at 471.565 kb on - strand, within PGA1_c04790 at 471.626 kb on - strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.650 kb on + strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.670 kb on + strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.760 kb on - strand, within PGA1_c04790 at 471.767 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.808 kb on + strand at 471.898 kb on + strand at 471.938 kb on + strand at 471.946 kb on - strand at 471.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 469,685 - +0.5 469,695 + -0.4 469,695 + +1.1 469,695 + -1.7 469,695 + +0.5 469,695 + -1.5 469,695 + +0.5 469,695 + -1.3 469,695 + -1.9 469,695 + -0.8 469,695 + -0.1 469,695 + -1.5 469,695 + -1.7 469,695 + +0.4 469,695 + +0.9 469,703 - +0.8 469,703 - -0.1 469,711 + +1.4 469,744 + +0.6 469,795 + -0.9 471,033 - -2.5 471,047 - -0.0 471,097 + +1.7 471,127 + -0.5 471,127 + +0.2 471,127 + +0.6 471,127 + +2.5 471,127 + +1.0 471,127 + +0.6 471,127 + -0.0 471,127 + -0.4 471,127 + +0.5 471,127 + -2.8 471,127 + +1.0 471,127 + +0.9 471,127 + -3.6 471,127 + -2.9 471,127 + +0.7 471,127 + +0.5 471,127 + -1.7 471,127 + +1.0 471,127 + +0.1 471,127 + +1.2 471,127 + +0.9 471,127 + +0.2 471,127 + +1.2 471,127 + -0.6 471,127 + -2.4 471,127 + +1.1 471,127 + +1.5 471,127 + -0.2 471,127 + -2.8 471,127 + +0.6 471,127 + -2.0 471,135 - -2.2 471,135 - +1.1 471,135 - +0.1 471,135 - -1.7 471,135 - -4.5 471,135 - -0.9 471,135 - +0.6 471,135 - +1.9 471,135 - +0.0 471,135 - +1.8 471,135 - +0.3 471,135 - +1.6 471,135 - +0.9 471,135 - -0.5 471,135 - -1.0 471,135 - +1.1 471,135 - -2.5 471,135 - -0.0 471,157 - +1.2 471,225 - -2.9 471,257 - PGA1_c04790 0.13 -0.1 471,268 + PGA1_c04790 0.14 +1.8 471,345 + PGA1_c04790 0.25 -0.9 471,345 + PGA1_c04790 0.25 -1.3 471,353 + PGA1_c04790 0.26 +0.5 471,353 - PGA1_c04790 0.26 -1.9 471,386 - PGA1_c04790 0.31 +1.0 471,453 - PGA1_c04790 0.40 +0.3 471,455 + PGA1_c04790 0.41 +0.3 471,565 - PGA1_c04790 0.56 -2.1 471,626 - PGA1_c04790 0.65 -1.9 471,640 + PGA1_c04790 0.67 -0.0 471,640 + PGA1_c04790 0.67 +0.7 471,640 + PGA1_c04790 0.67 -1.4 471,640 + PGA1_c04790 0.67 -3.2 471,648 - PGA1_c04790 0.68 -2.4 471,648 - PGA1_c04790 0.68 -1.9 471,650 + PGA1_c04790 0.68 +0.5 471,658 - PGA1_c04790 0.69 +1.2 471,658 - PGA1_c04790 0.69 +0.2 471,658 - PGA1_c04790 0.69 -0.3 471,670 + PGA1_c04790 0.71 -0.4 471,678 - PGA1_c04790 0.72 -1.1 471,678 - PGA1_c04790 0.72 -1.2 471,760 - PGA1_c04790 0.84 -1.0 471,767 + PGA1_c04790 0.85 +0.4 471,772 + PGA1_c04790 0.85 -2.9 471,772 + PGA1_c04790 0.85 -1.5 471,772 + PGA1_c04790 0.85 +1.3 471,775 - PGA1_c04790 0.86 +0.7 471,775 - PGA1_c04790 0.86 -1.0 471,775 - PGA1_c04790 0.86 -1.8 471,780 - PGA1_c04790 0.86 -1.5 471,780 - PGA1_c04790 0.86 -3.0 471,808 + +1.4 471,898 + -0.1 471,938 + +0.9 471,946 - -0.1 471,988 - +0.9
Or see this region's nucleotide sequence