Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04740 and PGA1_c04750 are separated by 123 nucleotides PGA1_c04750 and PGA1_c04760 are separated by 5 nucleotides PGA1_c04760 and PGA1_c04770 overlap by 4 nucleotides
PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635
_c04740
PGA1_c04750: PGA1_c04750 - metalloprotein, YbeY/UPF0054 family, at 466,759 to 467,289
_c04750
PGA1_c04760: PGA1_c04760 - magnesium and cobalt efflux protein corC-like protein, at 467,295 to 468,194
_c04760
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
Position (kb) 467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.311 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.371 kb on + strand, within PGA1_c04740 at 466.436 kb on - strand, within PGA1_c04740 at 466.457 kb on - strand, within PGA1_c04740 at 466.469 kb on + strand, within PGA1_c04740 at 466.493 kb on + strand, within PGA1_c04740 at 466.501 kb on - strand, within PGA1_c04740 at 466.521 kb on + strand, within PGA1_c04740 at 466.578 kb on + strand at 466.665 kb on + strand at 466.673 kb on - strand at 466.721 kb on - strand at 467.244 kb on + strand at 467.260 kb on - strand at 467.350 kb on - strand at 467.368 kb on - strand at 468.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 466,311 + PGA1_c04740 0.68 -1.4 466,343 + PGA1_c04740 0.71 -0.1 466,343 + PGA1_c04740 0.71 +1.3 466,353 + PGA1_c04740 0.72 +0.3 466,353 + PGA1_c04740 0.72 +1.0 466,353 + PGA1_c04740 0.72 -1.2 466,353 + PGA1_c04740 0.72 -1.3 466,361 - PGA1_c04740 0.73 -0.7 466,361 - PGA1_c04740 0.73 +1.5 466,361 - PGA1_c04740 0.73 +2.1 466,361 - PGA1_c04740 0.73 -0.6 466,371 + PGA1_c04740 0.74 +0.1 466,436 - PGA1_c04740 0.80 -2.5 466,457 - PGA1_c04740 0.82 +0.2 466,469 + PGA1_c04740 0.83 -0.5 466,493 + PGA1_c04740 0.86 -1.1 466,501 - PGA1_c04740 0.87 +0.9 466,521 + PGA1_c04740 0.89 +0.5 466,578 + +1.2 466,665 + -1.9 466,673 - +0.5 466,721 - -0.9 467,244 + -0.1 467,260 - -2.3 467,350 - +0.7 467,368 - -2.9 468,192 - +2.3
Or see this region's nucleotide sequence