Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04110 and PGA1_c04120 are separated by 1 nucleotides PGA1_c04120 and PGA1_c04130 are separated by 89 nucleotides
PGA1_c04110: PGA1_c04110 - putative fatty acid oxidation complex subunit alpha, at 397,059 to 399,152
_c04110
PGA1_c04120: PGA1_c04120 - 3-ketoacyl-CoA thiolase FadA, at 399,154 to 400,329
_c04120
PGA1_c04130: PGA1_c04130 - putative acyl-CoA dehydrogenase, at 400,419 to 401,618
_c04130
Position (kb) 399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 398.154 kb on + strand, within PGA1_c04110 at 398.299 kb on - strand, within PGA1_c04110 at 398.520 kb on + strand, within PGA1_c04110 at 398.537 kb on - strand, within PGA1_c04110 at 398.539 kb on + strand, within PGA1_c04110 at 398.597 kb on + strand, within PGA1_c04110 at 398.762 kb on + strand, within PGA1_c04110 at 398.826 kb on - strand, within PGA1_c04110 at 398.836 kb on - strand, within PGA1_c04110 at 398.888 kb on + strand, within PGA1_c04110 at 398.941 kb on - strand, within PGA1_c04110 at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.981 kb on + strand at 398.989 kb on - strand at 399.009 kb on + strand at 399.066 kb on + strand at 399.092 kb on - strand at 399.121 kb on + strand at 399.121 kb on + strand at 399.121 kb on + strand at 399.129 kb on - strand at 399.129 kb on - strand at 399.142 kb on - strand at 399.233 kb on + strand at 399.276 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.281 kb on + strand, within PGA1_c04120 at 399.289 kb on - strand, within PGA1_c04120 at 399.353 kb on - strand, within PGA1_c04120 at 399.440 kb on + strand, within PGA1_c04120 at 399.448 kb on - strand, within PGA1_c04120 at 399.513 kb on - strand, within PGA1_c04120 at 399.520 kb on + strand, within PGA1_c04120 at 399.577 kb on - strand, within PGA1_c04120 at 399.577 kb on - strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.650 kb on + strand, within PGA1_c04120 at 399.656 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.658 kb on - strand, within PGA1_c04120 at 399.766 kb on - strand, within PGA1_c04120 at 399.828 kb on - strand, within PGA1_c04120 at 399.839 kb on + strand, within PGA1_c04120 at 399.894 kb on + strand, within PGA1_c04120 at 399.895 kb on + strand, within PGA1_c04120 at 399.902 kb on - strand, within PGA1_c04120 at 399.916 kb on + strand, within PGA1_c04120 at 399.934 kb on + strand, within PGA1_c04120 at 399.953 kb on + strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 399.961 kb on - strand, within PGA1_c04120 at 400.051 kb on + strand, within PGA1_c04120 at 400.061 kb on + strand, within PGA1_c04120 at 400.093 kb on - strand, within PGA1_c04120 at 400.103 kb on - strand, within PGA1_c04120 at 400.103 kb on - strand, within PGA1_c04120 at 400.104 kb on - strand, within PGA1_c04120 at 400.155 kb on + strand, within PGA1_c04120 at 400.158 kb on - strand, within PGA1_c04120 at 400.222 kb on + strand at 400.230 kb on - strand at 400.233 kb on + strand at 400.281 kb on + strand at 400.307 kb on - strand at 400.336 kb on - strand at 400.354 kb on + strand at 400.362 kb on - strand at 400.362 kb on - strand at 400.362 kb on - strand at 400.400 kb on + strand at 400.491 kb on + strand at 400.499 kb on - strand at 400.522 kb on + strand at 400.522 kb on + strand at 400.527 kb on + strand at 400.540 kb on - strand, within PGA1_c04130 at 400.540 kb on - strand, within PGA1_c04130 at 400.585 kb on - strand, within PGA1_c04130 at 400.597 kb on + strand, within PGA1_c04130 at 400.600 kb on - strand, within PGA1_c04130 at 400.600 kb on - strand, within PGA1_c04130 at 400.629 kb on - strand, within PGA1_c04130 at 400.632 kb on + strand, within PGA1_c04130 at 400.677 kb on - strand, within PGA1_c04130 at 400.690 kb on + strand, within PGA1_c04130 at 400.698 kb on - strand, within PGA1_c04130 at 400.698 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.743 kb on - strand, within PGA1_c04130 at 400.799 kb on - strand, within PGA1_c04130 at 400.800 kb on - strand, within PGA1_c04130 at 400.824 kb on + strand, within PGA1_c04130 at 400.832 kb on - strand, within PGA1_c04130 at 400.841 kb on + strand, within PGA1_c04130 at 400.851 kb on + strand, within PGA1_c04130 at 400.859 kb on - strand, within PGA1_c04130 at 400.900 kb on + strand, within PGA1_c04130 at 400.900 kb on + strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.908 kb on - strand, within PGA1_c04130 at 400.934 kb on + strand, within PGA1_c04130 at 400.934 kb on + strand, within PGA1_c04130 at 400.940 kb on + strand, within PGA1_c04130 at 401.002 kb on - strand, within PGA1_c04130 at 401.002 kb on - strand, within PGA1_c04130 at 401.005 kb on + strand, within PGA1_c04130 at 401.005 kb on + strand, within PGA1_c04130 at 401.013 kb on - strand, within PGA1_c04130 at 401.013 kb on - strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.115 kb on + strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.116 kb on - strand, within PGA1_c04130 at 401.123 kb on - strand, within PGA1_c04130 at 401.159 kb on - strand, within PGA1_c04130 at 401.174 kb on - strand, within PGA1_c04130 at 401.222 kb on + strand, within PGA1_c04130 at 401.230 kb on - strand, within PGA1_c04130 at 401.316 kb on - strand, within PGA1_c04130
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 398,154 + PGA1_c04110 0.52 +1.0 398,299 - PGA1_c04110 0.59 -3.7 398,520 + PGA1_c04110 0.70 -0.3 398,537 - PGA1_c04110 0.71 +0.6 398,539 + PGA1_c04110 0.71 -0.8 398,597 + PGA1_c04110 0.73 -1.1 398,762 + PGA1_c04110 0.81 -0.5 398,826 - PGA1_c04110 0.84 -1.7 398,836 - PGA1_c04110 0.85 +2.5 398,888 + PGA1_c04110 0.87 +1.9 398,941 - PGA1_c04110 0.90 +1.0 398,981 + +0.6 398,981 + +0.6 398,981 + +0.7 398,981 + +2.5 398,981 + -1.5 398,981 + -0.5 398,981 + +2.0 398,981 + -1.5 398,981 + -1.3 398,981 + +1.8 398,989 - +0.6 399,009 + +1.7 399,066 + -2.1 399,092 - -1.6 399,121 + +0.8 399,121 + +1.3 399,121 + -1.1 399,129 - -2.9 399,129 - -2.1 399,142 - +0.6 399,233 + +0.5 399,276 + PGA1_c04120 0.10 +0.2 399,281 + PGA1_c04120 0.11 -1.3 399,281 + PGA1_c04120 0.11 +1.4 399,281 + PGA1_c04120 0.11 +1.5 399,281 + PGA1_c04120 0.11 +0.9 399,281 + PGA1_c04120 0.11 -2.5 399,281 + PGA1_c04120 0.11 +0.3 399,289 - PGA1_c04120 0.11 -0.5 399,353 - PGA1_c04120 0.17 +0.1 399,440 + PGA1_c04120 0.24 -1.1 399,448 - PGA1_c04120 0.25 -1.7 399,513 - PGA1_c04120 0.31 -0.0 399,520 + PGA1_c04120 0.31 +0.3 399,577 - PGA1_c04120 0.36 -1.5 399,577 - PGA1_c04120 0.36 -2.2 399,650 + PGA1_c04120 0.42 +0.5 399,650 + PGA1_c04120 0.42 +1.8 399,650 + PGA1_c04120 0.42 +1.9 399,650 + PGA1_c04120 0.42 +0.1 399,650 + PGA1_c04120 0.42 +0.2 399,650 + PGA1_c04120 0.42 +0.6 399,650 + PGA1_c04120 0.42 +1.4 399,650 + PGA1_c04120 0.42 -0.9 399,656 - PGA1_c04120 0.43 -3.1 399,658 - PGA1_c04120 0.43 -1.0 399,658 - PGA1_c04120 0.43 +2.2 399,658 - PGA1_c04120 0.43 +1.7 399,658 - PGA1_c04120 0.43 +1.3 399,658 - PGA1_c04120 0.43 +0.1 399,658 - PGA1_c04120 0.43 +1.5 399,766 - PGA1_c04120 0.52 +1.5 399,828 - PGA1_c04120 0.57 -0.2 399,839 + PGA1_c04120 0.58 -3.8 399,894 + PGA1_c04120 0.63 -2.5 399,895 + PGA1_c04120 0.63 +0.2 399,902 - PGA1_c04120 0.64 +1.0 399,916 + PGA1_c04120 0.65 +0.6 399,934 + PGA1_c04120 0.66 +0.9 399,953 + PGA1_c04120 0.68 +1.7 399,961 - PGA1_c04120 0.69 -0.8 399,961 - PGA1_c04120 0.69 +1.2 399,961 - PGA1_c04120 0.69 -2.0 399,961 - PGA1_c04120 0.69 -0.8 400,051 + PGA1_c04120 0.76 +1.0 400,061 + PGA1_c04120 0.77 -0.0 400,093 - PGA1_c04120 0.80 -0.3 400,103 - PGA1_c04120 0.81 +0.8 400,103 - PGA1_c04120 0.81 +0.7 400,104 - PGA1_c04120 0.81 -0.1 400,155 + PGA1_c04120 0.85 -2.7 400,158 - PGA1_c04120 0.85 -1.8 400,222 + -1.9 400,230 - -2.2 400,233 + +2.2 400,281 + -2.1 400,307 - -1.1 400,336 - +1.6 400,354 + -1.1 400,362 - +0.6 400,362 - -2.3 400,362 - -1.0 400,400 + -0.6 400,491 + +0.5 400,499 - +0.3 400,522 + +1.2 400,522 + -1.1 400,527 + -0.1 400,540 - PGA1_c04130 0.10 +0.9 400,540 - PGA1_c04130 0.10 -0.2 400,585 - PGA1_c04130 0.14 +1.5 400,597 + PGA1_c04130 0.15 +2.5 400,600 - PGA1_c04130 0.15 -1.3 400,600 - PGA1_c04130 0.15 -0.4 400,629 - PGA1_c04130 0.17 -3.2 400,632 + PGA1_c04130 0.18 +0.8 400,677 - PGA1_c04130 0.21 -2.2 400,690 + PGA1_c04130 0.23 -3.2 400,698 - PGA1_c04130 0.23 -1.8 400,698 - PGA1_c04130 0.23 +0.1 400,743 - PGA1_c04130 0.27 +0.9 400,743 - PGA1_c04130 0.27 -1.1 400,743 - PGA1_c04130 0.27 -0.7 400,799 - PGA1_c04130 0.32 +1.6 400,800 - PGA1_c04130 0.32 +0.2 400,824 + PGA1_c04130 0.34 +0.3 400,832 - PGA1_c04130 0.34 -2.1 400,841 + PGA1_c04130 0.35 +2.5 400,851 + PGA1_c04130 0.36 +1.8 400,859 - PGA1_c04130 0.37 -2.3 400,900 + PGA1_c04130 0.40 +0.6 400,900 + PGA1_c04130 0.40 +0.2 400,908 - PGA1_c04130 0.41 +0.1 400,908 - PGA1_c04130 0.41 -2.8 400,908 - PGA1_c04130 0.41 -3.2 400,934 + PGA1_c04130 0.43 +0.4 400,934 + PGA1_c04130 0.43 -2.2 400,940 + PGA1_c04130 0.43 -2.4 401,002 - PGA1_c04130 0.49 -0.6 401,002 - PGA1_c04130 0.49 -2.5 401,005 + PGA1_c04130 0.49 -1.3 401,005 + PGA1_c04130 0.49 +1.0 401,013 - PGA1_c04130 0.49 -1.7 401,013 - PGA1_c04130 0.49 +0.5 401,115 + PGA1_c04130 0.58 -0.6 401,115 + PGA1_c04130 0.58 -0.5 401,115 + PGA1_c04130 0.58 -0.5 401,115 + PGA1_c04130 0.58 +0.0 401,116 - PGA1_c04130 0.58 -1.7 401,116 - PGA1_c04130 0.58 +0.8 401,116 - PGA1_c04130 0.58 -0.7 401,123 - PGA1_c04130 0.59 -2.5 401,159 - PGA1_c04130 0.62 +2.2 401,174 - PGA1_c04130 0.63 -1.8 401,222 + PGA1_c04130 0.67 -0.7 401,230 - PGA1_c04130 0.68 +0.0 401,316 - PGA1_c04130 0.75 +1.2
Or see this region's nucleotide sequence