Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01660 and PGA1_262p01670 are separated by 297 nucleotides PGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotides PGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides
PGA1_262p01660: PGA1_262p01660 - transposase, at 181,003 to 182,307
_262p01660
PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483
_262p01670
PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329
_262p01680
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.675 kb on + strand at 182.712 kb on - strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.736 kb on + strand, within PGA1_262p01670 at 182.749 kb on + strand, within PGA1_262p01670 at 182.879 kb on + strand, within PGA1_262p01670 at 182.887 kb on - strand, within PGA1_262p01670 at 182.925 kb on - strand, within PGA1_262p01670 at 182.960 kb on + strand, within PGA1_262p01670 at 183.106 kb on - strand, within PGA1_262p01670 at 183.112 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.218 kb on - strand, within PGA1_262p01670 at 183.223 kb on - strand, within PGA1_262p01670 at 183.243 kb on - strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.262 kb on + strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.609 kb on + strand at 183.617 kb on - strand at 183.734 kb on - strand, within PGA1_262p01680 at 183.734 kb on - strand, within PGA1_262p01680 at 183.762 kb on + strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.803 kb on - strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.968 kb on - strand, within PGA1_262p01680 at 184.074 kb on + strand, within PGA1_262p01680 at 184.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 182,675 + -1.3 182,712 - PGA1_262p01670 0.12 +0.0 182,721 + PGA1_262p01670 0.13 +1.0 182,721 + PGA1_262p01670 0.13 -1.2 182,736 + PGA1_262p01670 0.15 +0.9 182,749 + PGA1_262p01670 0.16 +1.8 182,879 + PGA1_262p01670 0.31 +0.2 182,887 - PGA1_262p01670 0.32 -2.4 182,925 - PGA1_262p01670 0.36 +1.5 182,960 + PGA1_262p01670 0.40 -0.6 183,106 - PGA1_262p01670 0.57 +0.4 183,112 - PGA1_262p01670 0.58 -0.2 183,156 - PGA1_262p01670 0.63 +1.2 183,156 - PGA1_262p01670 0.63 +2.3 183,218 - PGA1_262p01670 0.70 -0.2 183,223 - PGA1_262p01670 0.70 -1.7 183,243 - PGA1_262p01670 0.73 +1.7 183,257 + PGA1_262p01670 0.74 -0.2 183,257 + PGA1_262p01670 0.74 +1.7 183,262 + PGA1_262p01670 0.75 +2.5 183,265 - PGA1_262p01670 0.75 +0.9 183,265 - PGA1_262p01670 0.75 +0.5 183,609 + +1.0 183,617 - +1.0 183,734 - PGA1_262p01680 0.24 +0.7 183,734 - PGA1_262p01680 0.24 -0.4 183,762 + PGA1_262p01680 0.28 -0.1 183,775 - PGA1_262p01680 0.30 +0.3 183,775 - PGA1_262p01680 0.30 +2.0 183,803 - PGA1_262p01680 0.33 -2.9 183,960 + PGA1_262p01680 0.53 +0.1 183,960 + PGA1_262p01680 0.53 +1.5 183,968 - PGA1_262p01680 0.54 -0.7 184,074 + PGA1_262p01680 0.68 +1.3 184,270 + +0.9
Or see this region's nucleotide sequence