Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01040 and PGA1_262p01050 are separated by 528 nucleotides PGA1_262p01050 and PGA1_262p01060 are separated by 117 nucleotides PGA1_262p01060 and PGA1_262p01070 are separated by 103 nucleotides
PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294
_262p01040
PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746
_262p01050
PGA1_262p01060: PGA1_262p01060 - Protein of unknown function (DUF995)., at 116,864 to 117,352
_262p01060
PGA1_262p01070: PGA1_262p01070 - tRNA-Arg, at 117,456 to 117,532
_262p01070
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 114.906 kb on + strand, within PGA1_262p01040 at 114.951 kb on - strand, within PGA1_262p01040 at 115.033 kb on + strand, within PGA1_262p01040 at 115.033 kb on - strand, within PGA1_262p01040 at 115.158 kb on + strand at 115.166 kb on - strand at 115.166 kb on - strand at 115.352 kb on + strand at 115.477 kb on - strand at 115.524 kb on - strand at 115.637 kb on + strand at 115.722 kb on - strand at 115.846 kb on + strand at 115.846 kb on + strand at 115.854 kb on - strand at 115.857 kb on + strand at 115.912 kb on + strand at 115.938 kb on + strand, within PGA1_262p01050 at 115.946 kb on - strand, within PGA1_262p01050 at 115.948 kb on + strand, within PGA1_262p01050 at 115.956 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.114 kb on - strand, within PGA1_262p01050 at 116.137 kb on - strand, within PGA1_262p01050 at 116.191 kb on - strand, within PGA1_262p01050 at 116.250 kb on - strand, within PGA1_262p01050 at 116.331 kb on - strand, within PGA1_262p01050 at 116.342 kb on + strand, within PGA1_262p01050 at 116.371 kb on + strand, within PGA1_262p01050 at 116.398 kb on + strand, within PGA1_262p01050 at 116.406 kb on - strand, within PGA1_262p01050 at 116.406 kb on - strand, within PGA1_262p01050 at 116.622 kb on + strand, within PGA1_262p01050 at 116.622 kb on + strand, within PGA1_262p01050 at 116.732 kb on - strand at 116.839 kb on + strand at 116.839 kb on + strand at 116.839 kb on + strand at 116.847 kb on - strand at 116.849 kb on + strand at 116.895 kb on + strand at 116.994 kb on - strand, within PGA1_262p01060 at 117.169 kb on - strand, within PGA1_262p01060 at 117.254 kb on - strand, within PGA1_262p01060 at 117.288 kb on - strand, within PGA1_262p01060 at 117.295 kb on - strand, within PGA1_262p01060 at 117.295 kb on - strand, within PGA1_262p01060 at 117.331 kb on - strand at 117.647 kb on + strand at 117.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 114,906 + PGA1_262p01040 0.75 -0.4 114,951 - PGA1_262p01040 0.78 +0.0 115,033 + PGA1_262p01040 0.83 -0.4 115,033 - PGA1_262p01040 0.83 +1.5 115,158 + +1.5 115,166 - -1.3 115,166 - +0.6 115,352 + +0.6 115,477 - +0.2 115,524 - +1.2 115,637 + -1.9 115,722 - -1.3 115,846 + -2.2 115,846 + -1.0 115,854 - -3.0 115,857 + -2.6 115,912 + -1.6 115,938 + PGA1_262p01050 0.12 +0.9 115,946 - PGA1_262p01050 0.13 -0.7 115,948 + PGA1_262p01050 0.14 -0.3 115,956 - PGA1_262p01050 0.14 -0.6 116,090 - PGA1_262p01050 0.29 +0.2 116,090 - PGA1_262p01050 0.29 -0.9 116,114 - PGA1_262p01050 0.31 +0.0 116,137 - PGA1_262p01050 0.34 +0.3 116,191 - PGA1_262p01050 0.40 -0.4 116,250 - PGA1_262p01050 0.46 +1.7 116,331 - PGA1_262p01050 0.55 -0.2 116,342 + PGA1_262p01050 0.56 -0.8 116,371 + PGA1_262p01050 0.59 +0.1 116,398 + PGA1_262p01050 0.62 +0.5 116,406 - PGA1_262p01050 0.63 -0.1 116,406 - PGA1_262p01050 0.63 -2.4 116,622 + PGA1_262p01050 0.86 -0.9 116,622 + PGA1_262p01050 0.86 +0.0 116,732 - +0.9 116,839 + +0.1 116,839 + -0.7 116,839 + +1.3 116,847 - +1.0 116,849 + -0.7 116,895 + -1.8 116,994 - PGA1_262p01060 0.27 +0.2 117,169 - PGA1_262p01060 0.62 +1.4 117,254 - PGA1_262p01060 0.80 +0.0 117,288 - PGA1_262p01060 0.87 -2.2 117,295 - PGA1_262p01060 0.88 -1.8 117,295 - PGA1_262p01060 0.88 -0.7 117,331 - -1.0 117,647 + +2.0 117,746 - +0.6
Or see this region's nucleotide sequence