Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01050

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01040 and PGA1_262p01050 are separated by 528 nucleotidesPGA1_262p01050 and PGA1_262p01060 are separated by 117 nucleotidesPGA1_262p01060 and PGA1_262p01070 are separated by 103 nucleotides PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294 _262p01040 PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746 _262p01050 PGA1_262p01060: PGA1_262p01060 - Protein of unknown function (DUF995)., at 116,864 to 117,352 _262p01060 PGA1_262p01070: PGA1_262p01070 - tRNA-Arg, at 117,456 to 117,532 _262p01070 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.906 kb on + strand, within PGA1_262p01040at 114.951 kb on - strand, within PGA1_262p01040at 115.033 kb on + strand, within PGA1_262p01040at 115.033 kb on - strand, within PGA1_262p01040at 115.158 kb on + strandat 115.166 kb on - strandat 115.166 kb on - strandat 115.352 kb on + strandat 115.477 kb on - strandat 115.524 kb on - strandat 115.637 kb on + strandat 115.722 kb on - strandat 115.846 kb on + strandat 115.846 kb on + strandat 115.854 kb on - strandat 115.857 kb on + strandat 115.912 kb on + strandat 115.938 kb on + strand, within PGA1_262p01050at 115.946 kb on - strand, within PGA1_262p01050at 115.948 kb on + strand, within PGA1_262p01050at 115.956 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.114 kb on - strand, within PGA1_262p01050at 116.137 kb on - strand, within PGA1_262p01050at 116.191 kb on - strand, within PGA1_262p01050at 116.250 kb on - strand, within PGA1_262p01050at 116.331 kb on - strand, within PGA1_262p01050at 116.342 kb on + strand, within PGA1_262p01050at 116.371 kb on + strand, within PGA1_262p01050at 116.398 kb on + strand, within PGA1_262p01050at 116.406 kb on - strand, within PGA1_262p01050at 116.406 kb on - strand, within PGA1_262p01050at 116.622 kb on + strand, within PGA1_262p01050at 116.622 kb on + strand, within PGA1_262p01050at 116.732 kb on - strandat 116.839 kb on + strandat 116.839 kb on + strandat 116.839 kb on + strandat 116.847 kb on - strandat 116.849 kb on + strandat 116.895 kb on + strandat 116.994 kb on - strand, within PGA1_262p01060at 117.169 kb on - strand, within PGA1_262p01060at 117.254 kb on - strand, within PGA1_262p01060at 117.288 kb on - strand, within PGA1_262p01060at 117.295 kb on - strand, within PGA1_262p01060at 117.295 kb on - strand, within PGA1_262p01060at 117.331 kb on - strandat 117.647 kb on + strandat 117.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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114,906 + PGA1_262p01040 0.75 -0.4
114,951 - PGA1_262p01040 0.78 +0.0
115,033 + PGA1_262p01040 0.83 -0.4
115,033 - PGA1_262p01040 0.83 +1.5
115,158 + +1.5
115,166 - -1.3
115,166 - +0.6
115,352 + +0.6
115,477 - +0.2
115,524 - +1.2
115,637 + -1.9
115,722 - -1.3
115,846 + -2.2
115,846 + -1.0
115,854 - -3.0
115,857 + -2.6
115,912 + -1.6
115,938 + PGA1_262p01050 0.12 +0.9
115,946 - PGA1_262p01050 0.13 -0.7
115,948 + PGA1_262p01050 0.14 -0.3
115,956 - PGA1_262p01050 0.14 -0.6
116,090 - PGA1_262p01050 0.29 +0.2
116,090 - PGA1_262p01050 0.29 -0.9
116,114 - PGA1_262p01050 0.31 +0.0
116,137 - PGA1_262p01050 0.34 +0.3
116,191 - PGA1_262p01050 0.40 -0.4
116,250 - PGA1_262p01050 0.46 +1.7
116,331 - PGA1_262p01050 0.55 -0.2
116,342 + PGA1_262p01050 0.56 -0.8
116,371 + PGA1_262p01050 0.59 +0.1
116,398 + PGA1_262p01050 0.62 +0.5
116,406 - PGA1_262p01050 0.63 -0.1
116,406 - PGA1_262p01050 0.63 -2.4
116,622 + PGA1_262p01050 0.86 -0.9
116,622 + PGA1_262p01050 0.86 +0.0
116,732 - +0.9
116,839 + +0.1
116,839 + -0.7
116,839 + +1.3
116,847 - +1.0
116,849 + -0.7
116,895 + -1.8
116,994 - PGA1_262p01060 0.27 +0.2
117,169 - PGA1_262p01060 0.62 +1.4
117,254 - PGA1_262p01060 0.80 +0.0
117,288 - PGA1_262p01060 0.87 -2.2
117,295 - PGA1_262p01060 0.88 -1.8
117,295 - PGA1_262p01060 0.88 -0.7
117,331 - -1.0
117,647 + +2.0
117,746 - +0.6

Or see this region's nucleotide sequence