Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36320

Experiment: Glycine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (C)
3,798,026	+				+1.3
3,798,044	+				-1.8
3,798,052	-				-1.2
3,798,054	-				-3.0
3,798,076	+				+0.8
3,798,082	+				+0.1
3,798,091	-				-1.1
3,798,097	-				-0.6
3,798,126	+				-1.6
3,798,126	+				-2.4
3,798,134	-				-0.9
3,798,135	-				+0.7
3,798,158	+				-0.7
3,798,167	-				+1.0
3,798,189	+				-0.5
3,798,196	+				+0.5
3,798,204	-				-0.5
3,798,215	+				-1.9
3,798,223	-				-0.3
3,798,223	-				+0.5
3,798,223	-				-1.9
3,798,252	+				+0.1
3,798,284	-				+0.5
3,798,341	+				-1.6
3,798,349	-				+0.9
3,798,357	-				+0.5
3,798,378	+		PGA1_c36320	0.11	+1.4
3,798,460	-		PGA1_c36320	0.16	-0.9
3,798,462	+		PGA1_c36320	0.16	-1.1
3,798,462	+		PGA1_c36320	0.16	-2.7
3,798,462	+		PGA1_c36320	0.16	-1.8
3,798,462	+		PGA1_c36320	0.16	-0.1
3,798,462	+		PGA1_c36320	0.16	+0.4
3,798,470	-		PGA1_c36320	0.16	-0.1
3,798,470	-		PGA1_c36320	0.16	-0.5
3,798,470	-		PGA1_c36320	0.16	-2.7
3,798,483	+		PGA1_c36320	0.17	+2.1
3,798,518	+		PGA1_c36320	0.19	-0.5
3,798,518	+		PGA1_c36320	0.19	+1.1
3,798,531	+		PGA1_c36320	0.20	-2.4
3,798,547	-		PGA1_c36320	0.21	-0.9
3,798,567	+		PGA1_c36320	0.22	+0.8
3,798,567	+		PGA1_c36320	0.22	-0.5
3,798,575	-		PGA1_c36320	0.22	+1.2
3,798,575	-		PGA1_c36320	0.22	-1.1
3,798,609	-		PGA1_c36320	0.24	+1.7
3,798,634	+		PGA1_c36320	0.26	+0.2
3,798,642	-		PGA1_c36320	0.26	-1.1
3,798,696	+		PGA1_c36320	0.30	-1.2
3,798,696	+		PGA1_c36320	0.30	-1.4
3,798,704	-		PGA1_c36320	0.30	+0.7
3,798,704	-		PGA1_c36320	0.30	+1.2
3,798,704	-		PGA1_c36320	0.30	+0.2
3,798,786	-		PGA1_c36320	0.35	-0.4
3,798,827	-		PGA1_c36320	0.37	-0.5
3,798,838	-		PGA1_c36320	0.38	-1.0
3,798,845	+		PGA1_c36320	0.39	+1.1
3,798,863	+		PGA1_c36320	0.40	+0.1
3,798,865	+		PGA1_c36320	0.40	+0.6
3,798,898	+		PGA1_c36320	0.42	-0.7
3,798,925	-		PGA1_c36320	0.43	-1.1
3,798,943	+		PGA1_c36320	0.44	+0.1
3,798,943	+		PGA1_c36320	0.44	+0.8
3,798,943	+		PGA1_c36320	0.44	+0.6
3,798,943	+		PGA1_c36320	0.44	+1.2
3,798,943	+		PGA1_c36320	0.44	+1.5
3,798,943	+		PGA1_c36320	0.44	+2.0
3,798,943	+		PGA1_c36320	0.44	-1.4
3,798,943	+		PGA1_c36320	0.44	-1.8
3,798,943	+		PGA1_c36320	0.44	+0.6
3,798,948	+		PGA1_c36320	0.45	+1.0
3,798,951	-		PGA1_c36320	0.45	+1.8
3,798,951	-		PGA1_c36320	0.45	-0.4
3,798,951	-		PGA1_c36320	0.45	-2.1
3,798,951	-		PGA1_c36320	0.45	-0.9
3,798,951	-		PGA1_c36320	0.45	+1.1
3,798,951	-		PGA1_c36320	0.45	-0.4
3,798,951	-		PGA1_c36320	0.45	+0.2
3,798,951	-		PGA1_c36320	0.45	-1.9
3,798,951	-		PGA1_c36320	0.45	-0.2
3,798,951	-		PGA1_c36320	0.45	+1.4
3,798,951	-		PGA1_c36320	0.45	-0.4
3,798,951	-		PGA1_c36320	0.45	+0.1
3,798,951	-		PGA1_c36320	0.45	+1.0
3,798,951	-		PGA1_c36320	0.45	-1.6
3,798,951	-		PGA1_c36320	0.45	+0.3
3,798,951	-		PGA1_c36320	0.45	+0.6
3,798,951	-		PGA1_c36320	0.45	+1.6
3,798,957	-		PGA1_c36320	0.45	+0.3
3,798,957	-		PGA1_c36320	0.45	+0.4
3,799,021	-		PGA1_c36320	0.49	-1.5
3,799,024	+		PGA1_c36320	0.49	+0.5
3,799,024	+		PGA1_c36320	0.49	-0.2
3,799,024	+		PGA1_c36320	0.49	-2.0
3,799,030	+		PGA1_c36320	0.50	-0.2
3,799,082	-		PGA1_c36320	0.53	-0.0
3,799,109	-		PGA1_c36320	0.54	-0.3
3,799,109	-		PGA1_c36320	0.54	-0.4
3,799,200	-		PGA1_c36320	0.60	-0.7
3,799,204	+		PGA1_c36320	0.60	-2.6
3,799,206	+		PGA1_c36320	0.60	-2.0
3,799,214	-		PGA1_c36320	0.60	-1.9
3,799,282	+		PGA1_c36320	0.65	+0.5
3,799,282	+		PGA1_c36320	0.65	+1.3
3,799,327	+		PGA1_c36320	0.67	-3.0
3,799,418	+		PGA1_c36320	0.73	-0.8
3,799,426	+		PGA1_c36320	0.73	+2.4
3,799,509	-		PGA1_c36320	0.78	-2.1
3,799,510	+		PGA1_c36320	0.78	+1.8
3,799,531	-		PGA1_c36320	0.79	+2.1
3,799,531	-		PGA1_c36320	0.79	-1.3
3,799,540	-		PGA1_c36320	0.80	-0.3
3,799,566	-		PGA1_c36320	0.81	-1.4
3,799,566	-		PGA1_c36320	0.81	+0.5
3,799,566	-		PGA1_c36320	0.81	-3.0
3,799,567	-		PGA1_c36320	0.81	-3.0
3,799,612	-		PGA1_c36320	0.84	+0.1
3,799,690	-		PGA1_c36320	0.89	-2.0
3,799,913	+				-2.3
3,799,916	+				-0.4
3,799,958	+		PGA1_c36330	0.11	+0.3
3,799,958	+		PGA1_c36330	0.11	-2.1
3,800,015	+		PGA1_c36330	0.18	-1.0
3,800,060	-		PGA1_c36330	0.24	+1.1
3,800,061	+		PGA1_c36330	0.24	+0.4
3,800,061	+		PGA1_c36330	0.24	+0.2
3,800,061	+		PGA1_c36330	0.24	-0.9
3,800,069	-		PGA1_c36330	0.25	+0.2
3,800,069	-		PGA1_c36330	0.25	-0.0
3,800,087	+		PGA1_c36330	0.27	+1.0
3,800,094	-		PGA1_c36330	0.28	+0.6
3,800,095	-		PGA1_c36330	0.28	+1.8
3,800,120	+		PGA1_c36330	0.31	+2.2
3,800,259	+		PGA1_c36330	0.49	+0.5
3,800,259	+		PGA1_c36330	0.49	+1.4
3,800,267	-		PGA1_c36330	0.50	-1.0
3,800,267	-		PGA1_c36330	0.50	-0.5
3,800,424	-		PGA1_c36330	0.70	-0.1
3,800,488	+		PGA1_c36330	0.78	-1.1
3,800,496	-		PGA1_c36330	0.79	-1.1
3,800,498	-		PGA1_c36330	0.79	-0.4
3,800,507	-		PGA1_c36330	0.81	+0.1
3,800,514	+		PGA1_c36330	0.81	-1.8
3,800,521	+		PGA1_c36330	0.82	-0.3
3,800,530	-		PGA1_c36330	0.83	-0.3
3,800,585	-				-0.6
3,800,596	+				+0.7
3,800,604	-				+1.4
3,800,624	+				-2.1
3,800,626	-				-2.3
3,800,829	+		PGA1_c36340	0.11	+0.1
3,800,829	+		PGA1_c36340	0.11	+0.9
3,800,829	+		PGA1_c36340	0.11	+1.2
3,800,829	+		PGA1_c36340	0.11	+1.6
3,800,829	+		PGA1_c36340	0.11	-0.6
3,800,829	+		PGA1_c36340	0.11	+0.1
3,800,829	+		PGA1_c36340	0.11	-1.0
3,800,829	+		PGA1_c36340	0.11	-1.2
3,800,829	+		PGA1_c36340	0.11	-0.2
3,800,837	-		PGA1_c36340	0.12	-2.4
3,800,837	-		PGA1_c36340	0.12	+0.8
3,800,846	+		PGA1_c36340	0.12	-2.6
3,800,854	-		PGA1_c36340	0.13	-1.8
3,800,854	-		PGA1_c36340	0.13	+0.1