Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32640

Experiment: Glycine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycine (C)
3,421,031	-		PGA1_c32630	0.65	-0.4
3,421,046	-		PGA1_c32630	0.66	-1.0
3,421,052	+		PGA1_c32630	0.66	-3.2
3,421,070	-		PGA1_c32630	0.67	+0.3
3,421,081	-		PGA1_c32630	0.67	-1.3
3,421,123	+		PGA1_c32630	0.70	+0.0
3,421,126	-		PGA1_c32630	0.70	+0.8
3,421,126	-		PGA1_c32630	0.70	-2.0
3,421,126	-		PGA1_c32630	0.70	+0.6
3,421,131	+		PGA1_c32630	0.70	+0.0
3,421,131	+		PGA1_c32630	0.70	-2.2
3,421,131	+		PGA1_c32630	0.70	-0.1
3,421,131	-		PGA1_c32630	0.70	+0.8
3,421,139	-		PGA1_c32630	0.70	+1.3
3,421,139	-		PGA1_c32630	0.70	+2.5
3,421,149	-		PGA1_c32630	0.71	-2.8
3,421,158	+		PGA1_c32630	0.71	+1.0
3,421,173	-		PGA1_c32630	0.72	-0.6
3,421,221	-		PGA1_c32630	0.75	+1.4
3,421,222	+		PGA1_c32630	0.75	+1.0
3,421,239	+		PGA1_c32630	0.76	+0.9
3,421,244	+		PGA1_c32630	0.76	+1.1
3,421,259	-		PGA1_c32630	0.77	+1.5
3,421,317	-		PGA1_c32630	0.80	+0.9
3,421,317	-		PGA1_c32630	0.80	+1.7
3,421,327	+		PGA1_c32630	0.80	+2.5
3,421,345	-		PGA1_c32630	0.81	-0.8
3,421,373	-		PGA1_c32630	0.82	+2.4
3,421,410	-		PGA1_c32630	0.84	-2.8
3,421,447	+		PGA1_c32630	0.86	+1.7
3,421,453	+		PGA1_c32630	0.87	+1.2
3,421,606	+				+0.7
3,421,624	-				-0.0
3,421,625	-				-3.2
3,421,663	-				-0.2
3,421,664	-				+2.8
3,421,701	+				-2.8
3,421,717	-				+1.5
3,421,730	-				+2.5
3,421,741	-				+0.9
3,421,752	+				+1.3
3,421,765	-				+0.4
3,421,820	+				-0.6
3,421,828	-				-1.0
3,421,828	-				-0.8
3,421,828	-				-0.2
3,421,905	+				-0.4
3,421,907	+				+2.1
3,421,913	-				-0.2
3,421,919	+				+0.2
3,421,927	-				+2.1
3,421,929	+				-1.2
3,422,017	+				-3.0
3,422,025	-				-1.2
3,422,134	-				+0.0
3,422,139	-				+0.0
3,422,227	-		PGA1_c32640	0.13	-0.4
3,422,286	-		PGA1_c32640	0.16	-1.2
3,422,312	-		PGA1_c32640	0.17	+0.7
3,422,317	+		PGA1_c32640	0.17	-1.8
3,422,325	-		PGA1_c32640	0.18	-1.7
3,422,326	-		PGA1_c32640	0.18	+1.1
3,422,380	+		PGA1_c32640	0.21	-0.5
3,422,483	-		PGA1_c32640	0.26	-2.0
3,422,522	-		PGA1_c32640	0.28	+1.8
3,422,524	+		PGA1_c32640	0.28	+0.5
3,422,580	-		PGA1_c32640	0.31	+1.8
3,422,580	-		PGA1_c32640	0.31	+0.4
3,422,590	-		PGA1_c32640	0.32	-2.8
3,422,604	+		PGA1_c32640	0.33	+2.1
3,422,677	+		PGA1_c32640	0.36	-1.0
3,422,683	+		PGA1_c32640	0.37	+1.5
3,422,696	-		PGA1_c32640	0.37	+0.7
3,422,778	+		PGA1_c32640	0.42	-1.2
3,422,809	+		PGA1_c32640	0.43	-3.0
3,422,831	+		PGA1_c32640	0.44	-0.1
3,422,839	-		PGA1_c32640	0.45	-3.0
3,422,849	-		PGA1_c32640	0.45	-1.2
3,422,855	-		PGA1_c32640	0.46	+1.8
3,422,882	+		PGA1_c32640	0.47	+0.0
3,422,892	-		PGA1_c32640	0.48	+0.3
3,422,944	+		PGA1_c32640	0.50	+0.1
3,422,989	+		PGA1_c32640	0.53	+1.1
3,422,989	+		PGA1_c32640	0.53	+1.3
3,422,989	+		PGA1_c32640	0.53	-1.0
3,422,989	+		PGA1_c32640	0.53	+1.8
3,422,997	-		PGA1_c32640	0.53	+2.3
3,422,997	-		PGA1_c32640	0.53	-0.7
3,422,997	-		PGA1_c32640	0.53	-0.1
3,423,066	+		PGA1_c32640	0.57	+1.3
3,423,068	-		PGA1_c32640	0.57	-2.4
3,423,126	+		PGA1_c32640	0.60	-2.9
3,423,142	+		PGA1_c32640	0.61	+0.1
3,423,144	+		PGA1_c32640	0.61	+0.0
3,423,149	+		PGA1_c32640	0.61	+0.7
3,423,179	-		PGA1_c32640	0.63	-0.3
3,423,213	+		PGA1_c32640	0.65	-2.3
3,423,220	+		PGA1_c32640	0.65	+1.7
3,423,220	+		PGA1_c32640	0.65	+0.6
3,423,228	-		PGA1_c32640	0.65	+1.7
3,423,279	+		PGA1_c32640	0.68	+2.5
3,423,293	+		PGA1_c32640	0.69	+0.1
3,423,311	-		PGA1_c32640	0.70	-1.5
3,423,355	+		PGA1_c32640	0.72	-2.0
3,423,398	+		PGA1_c32640	0.74	-0.7
3,423,398	+		PGA1_c32640	0.74	-1.6
3,423,405	+		PGA1_c32640	0.75	+0.5
3,423,407	-		PGA1_c32640	0.75	+1.0
3,423,422	+		PGA1_c32640	0.76	-0.5
3,423,494	-		PGA1_c32640	0.79	+0.4
3,423,494	-		PGA1_c32640	0.79	+0.6
3,423,494	-		PGA1_c32640	0.79	-0.0
3,423,494	-		PGA1_c32640	0.79	-2.1
3,423,558	+		PGA1_c32640	0.83	-0.5
3,423,566	-		PGA1_c32640	0.83	+0.5
3,423,592	+		PGA1_c32640	0.84	+2.6
3,423,617	-		PGA1_c32640	0.86	-0.1
3,423,619	+		PGA1_c32640	0.86	+0.5
3,423,619	-		PGA1_c32640	0.86	+2.2
3,423,632	+		PGA1_c32640	0.87	-0.4
3,423,632	+		PGA1_c32640	0.87	+0.2
3,423,632	+		PGA1_c32640	0.87	-1.2
3,423,640	-		PGA1_c32640	0.87	-1.8
3,423,640	-		PGA1_c32640	0.87	+1.9
3,423,684	-		PGA1_c32640	0.89	-1.8
3,423,694	-		PGA1_c32640	0.90	+1.1
3,423,714	+				+1.6
3,423,714	+				-1.7
3,423,749	-				-1.1
3,423,754	-				-0.5
3,423,776	-				+0.6
3,423,780	+				-2.8
3,423,788	-				+0.9
3,423,803	+				+0.3
3,423,803	+				+0.9
3,423,811	-				+1.2
3,423,811	-				+0.0
3,423,829	-				+0.5
3,423,843	+				-2.3
3,423,853	-				-1.0
3,423,860	-				+0.7
3,423,862	+				+1.9
3,423,865	-				-1.4
3,423,870	-				-2.2
3,423,870	-				+0.4
3,423,870	-				+1.1
3,423,919	+				-1.6
3,423,932	-				+0.6
3,423,942	-				-0.3
3,423,955	-		PGA1_c32650	0.10	+0.8
3,423,955	-		PGA1_c32650	0.10	+0.1
3,423,955	-		PGA1_c32650	0.10	+2.0
3,424,007	+		PGA1_c32650	0.18	+1.0
3,424,022	+		PGA1_c32650	0.20	-0.4
3,424,030	+		PGA1_c32650	0.21	-0.4
3,424,067	+		PGA1_c32650	0.26	+0.4
3,424,075	-		PGA1_c32650	0.27	-0.8
3,424,091	+		PGA1_c32650	0.30	-1.7
3,424,146	-		PGA1_c32650	0.37	-0.3
3,424,146	-		PGA1_c32650	0.37	+0.3
3,424,172	-		PGA1_c32650	0.41	+0.0
3,424,324	+		PGA1_c32650	0.63	+2.7
3,424,332	-		PGA1_c32650	0.64	+0.2
3,424,345	+		PGA1_c32650	0.66	-2.1
3,424,345	+		PGA1_c32650	0.66	-2.6
3,424,345	+		PGA1_c32650	0.66	+1.9
3,424,399	+		PGA1_c32650	0.73	+1.8
3,424,442	+		PGA1_c32650	0.79	+0.9
3,424,444	+		PGA1_c32650	0.80	+1.4
3,424,453	+		PGA1_c32650	0.81	+0.8
3,424,453	+		PGA1_c32650	0.81	+0.6
3,424,463	+		PGA1_c32650	0.82	+1.8
3,424,463	+		PGA1_c32650	0.82	+1.9
3,424,463	+		PGA1_c32650	0.82	-2.4
3,424,471	-		PGA1_c32650	0.83	+0.3
3,424,528	-				-0.4
3,424,547	+				+1.6
3,424,570	+				-0.4
3,424,611	+				+1.5
3,424,625	+				-0.4
3,424,664	+				+0.1
3,424,799	-		PGA1_c32660	0.57	+1.3
3,424,820	-		PGA1_c32660	0.67	-0.7
3,424,843	+		PGA1_c32660	0.77	+0.9
3,424,856	-		PGA1_c32660	0.82	-0.2