Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02760

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02750 and PGA1_c02760 are separated by 102 nucleotidesPGA1_c02760 and PGA1_c02770 are separated by 119 nucleotides PGA1_c02750: PGA1_c02750 - Metal-dependent hydrolase, at 263,344 to 264,345 _c02750 PGA1_c02760: PGA1_c02760 - putative methylated-DNA--protein-cysteine methyltransferase, at 264,448 to 265,518 _c02760 PGA1_c02770: PGA1_c02770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI, at 265,638 to 267,158 _c02770 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.523 kb on + strand, within PGA1_c02750at 263.547 kb on + strand, within PGA1_c02750at 263.556 kb on + strand, within PGA1_c02750at 263.604 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.648 kb on + strand, within PGA1_c02750at 263.649 kb on - strand, within PGA1_c02750at 263.668 kb on + strand, within PGA1_c02750at 263.726 kb on - strand, within PGA1_c02750at 263.731 kb on - strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.818 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.958 kb on - strand, within PGA1_c02750at 263.983 kb on + strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 264.039 kb on + strand, within PGA1_c02750at 264.040 kb on + strand, within PGA1_c02750at 264.044 kb on + strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.064 kb on + strand, within PGA1_c02750at 264.120 kb on + strand, within PGA1_c02750at 264.141 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.143 kb on + strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.183 kb on + strand, within PGA1_c02750at 264.190 kb on - strand, within PGA1_c02750at 264.247 kb on - strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.259 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.265 kb on + strandat 264.273 kb on + strandat 264.273 kb on - strandat 264.293 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.327 kb on - strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.432 kb on + strandat 264.435 kb on - strandat 264.435 kb on - strandat 264.440 kb on - strandat 264.440 kb on - strandat 264.440 kb on - strandat 264.523 kb on + strandat 264.531 kb on - strandat 264.531 kb on - strandat 264.614 kb on + strand, within PGA1_c02760at 264.622 kb on - strand, within PGA1_c02760at 264.622 kb on - strand, within PGA1_c02760at 264.647 kb on + strand, within PGA1_c02760at 264.655 kb on - strand, within PGA1_c02760at 264.656 kb on - strand, within PGA1_c02760at 264.741 kb on - strand, within PGA1_c02760at 264.748 kb on - strand, within PGA1_c02760at 264.770 kb on + strand, within PGA1_c02760at 264.770 kb on + strand, within PGA1_c02760at 264.795 kb on - strand, within PGA1_c02760at 264.805 kb on - strand, within PGA1_c02760at 264.833 kb on + strand, within PGA1_c02760at 264.859 kb on + strand, within PGA1_c02760at 264.877 kb on + strand, within PGA1_c02760at 264.921 kb on - strand, within PGA1_c02760at 264.943 kb on + strand, within PGA1_c02760at 264.951 kb on - strand, within PGA1_c02760at 265.057 kb on + strand, within PGA1_c02760at 265.065 kb on - strand, within PGA1_c02760at 265.068 kb on + strand, within PGA1_c02760at 265.090 kb on + strand, within PGA1_c02760at 265.098 kb on - strand, within PGA1_c02760at 265.156 kb on - strand, within PGA1_c02760at 265.170 kb on + strand, within PGA1_c02760at 265.178 kb on - strand, within PGA1_c02760at 265.215 kb on + strand, within PGA1_c02760at 265.215 kb on + strand, within PGA1_c02760at 265.225 kb on + strand, within PGA1_c02760at 265.225 kb on + strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.307 kb on + strand, within PGA1_c02760at 265.325 kb on + strand, within PGA1_c02760at 265.393 kb on - strand, within PGA1_c02760at 265.400 kb on + strand, within PGA1_c02760at 265.400 kb on + strand, within PGA1_c02760at 265.400 kb on + strand, within PGA1_c02760at 265.408 kb on - strand, within PGA1_c02760at 265.408 kb on - strand, within PGA1_c02760at 265.408 kb on - strand, within PGA1_c02760at 265.408 kb on - strand, within PGA1_c02760at 265.408 kb on - strand, within PGA1_c02760at 265.423 kb on - strandat 265.520 kb on - strandat 265.520 kb on - strandat 265.547 kb on + strandat 265.557 kb on + strandat 265.557 kb on + strandat 265.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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263,523 + PGA1_c02750 0.18 +0.7
263,547 + PGA1_c02750 0.20 +0.5
263,556 + PGA1_c02750 0.21 +0.3
263,604 + PGA1_c02750 0.26 +1.2
263,635 + PGA1_c02750 0.29 -2.1
263,635 + PGA1_c02750 0.29 -2.1
263,643 - PGA1_c02750 0.30 -3.3
263,643 - PGA1_c02750 0.30 +1.9
263,648 + PGA1_c02750 0.30 -2.9
263,649 - PGA1_c02750 0.30 +0.6
263,668 + PGA1_c02750 0.32 +1.9
263,726 - PGA1_c02750 0.38 +0.9
263,731 - PGA1_c02750 0.39 -0.2
263,810 + PGA1_c02750 0.47 +1.3
263,810 + PGA1_c02750 0.47 -1.5
263,818 - PGA1_c02750 0.47 +1.7
263,823 - PGA1_c02750 0.48 -3.0
263,823 - PGA1_c02750 0.48 -2.1
263,823 - PGA1_c02750 0.48 +0.8
263,823 - PGA1_c02750 0.48 +1.5
263,950 + PGA1_c02750 0.60 -0.1
263,950 + PGA1_c02750 0.60 +0.0
263,958 - PGA1_c02750 0.61 +1.5
263,983 + PGA1_c02750 0.64 +0.8
263,991 - PGA1_c02750 0.65 +1.8
263,991 - PGA1_c02750 0.65 -0.8
264,039 + PGA1_c02750 0.69 -2.2
264,040 + PGA1_c02750 0.69 +0.3
264,044 + PGA1_c02750 0.70 -0.5
264,062 - PGA1_c02750 0.72 +0.3
264,062 - PGA1_c02750 0.72 +1.4
264,064 + PGA1_c02750 0.72 +0.9
264,120 + PGA1_c02750 0.77 +0.4
264,141 + PGA1_c02750 0.80 +0.1
264,142 + PGA1_c02750 0.80 +0.2
264,142 + PGA1_c02750 0.80 +1.5
264,143 + PGA1_c02750 0.80 -0.5
264,150 - PGA1_c02750 0.80 -0.7
264,150 - PGA1_c02750 0.80 -0.0
264,183 + PGA1_c02750 0.84 -1.2
264,190 - PGA1_c02750 0.84 -0.7
264,247 - -0.7
264,256 + -0.6
264,256 + -2.9
264,256 + -1.9
264,259 - -0.4
264,264 - +0.4
264,264 - -1.1
264,264 - -2.7
264,265 + +1.5
264,273 + -1.7
264,273 - +1.4
264,293 + -1.3
264,319 + -0.2
264,319 + +1.1
264,319 + +0.4
264,327 - +0.3
264,427 + -0.2
264,427 + -2.6
264,427 + -0.5
264,427 + -1.7
264,427 + +2.2
264,427 + +2.7
264,427 + +0.5
264,432 + -0.1
264,435 - -0.8
264,435 - -0.1
264,440 - +0.1
264,440 - -3.2
264,440 - -0.7
264,523 + -2.2
264,531 - -1.3
264,531 - +0.4
264,614 + PGA1_c02760 0.15 -0.2
264,622 - PGA1_c02760 0.16 +1.0
264,622 - PGA1_c02760 0.16 +0.4
264,647 + PGA1_c02760 0.19 +1.3
264,655 - PGA1_c02760 0.19 -0.9
264,656 - PGA1_c02760 0.19 +0.2
264,741 - PGA1_c02760 0.27 +0.6
264,748 - PGA1_c02760 0.28 +0.3
264,770 + PGA1_c02760 0.30 +0.8
264,770 + PGA1_c02760 0.30 +1.7
264,795 - PGA1_c02760 0.32 +0.8
264,805 - PGA1_c02760 0.33 +2.2
264,833 + PGA1_c02760 0.36 +1.3
264,859 + PGA1_c02760 0.38 +0.3
264,877 + PGA1_c02760 0.40 -2.1
264,921 - PGA1_c02760 0.44 -1.2
264,943 + PGA1_c02760 0.46 -2.3
264,951 - PGA1_c02760 0.47 +1.5
265,057 + PGA1_c02760 0.57 +0.2
265,065 - PGA1_c02760 0.58 +1.2
265,068 + PGA1_c02760 0.58 -0.8
265,090 + PGA1_c02760 0.60 -1.9
265,098 - PGA1_c02760 0.61 +0.6
265,156 - PGA1_c02760 0.66 -0.8
265,170 + PGA1_c02760 0.67 -0.2
265,178 - PGA1_c02760 0.68 -0.4
265,215 + PGA1_c02760 0.72 +2.7
265,215 + PGA1_c02760 0.72 +0.1
265,225 + PGA1_c02760 0.73 -0.7
265,225 + PGA1_c02760 0.73 +0.5
265,233 - PGA1_c02760 0.73 -0.5
265,233 - PGA1_c02760 0.73 +1.1
265,233 - PGA1_c02760 0.73 +0.5
265,260 + PGA1_c02760 0.76 -2.8
265,260 + PGA1_c02760 0.76 +1.4
265,260 + PGA1_c02760 0.76 -2.4
265,260 + PGA1_c02760 0.76 -1.5
265,260 + PGA1_c02760 0.76 -1.3
265,260 + PGA1_c02760 0.76 +1.0
265,260 + PGA1_c02760 0.76 -0.1
265,260 + PGA1_c02760 0.76 +1.4
265,260 + PGA1_c02760 0.76 +1.2
265,260 + PGA1_c02760 0.76 -2.1
265,260 + PGA1_c02760 0.76 -0.2
265,260 + PGA1_c02760 0.76 -0.1
265,260 + PGA1_c02760 0.76 +0.6
265,260 + PGA1_c02760 0.76 +1.5
265,260 + PGA1_c02760 0.76 +1.1
265,268 - PGA1_c02760 0.77 +2.1
265,268 - PGA1_c02760 0.77 +1.3
265,268 - PGA1_c02760 0.77 +0.6
265,268 - PGA1_c02760 0.77 -1.3
265,268 - PGA1_c02760 0.77 +1.5
265,268 - PGA1_c02760 0.77 -0.5
265,268 - PGA1_c02760 0.77 -0.1
265,307 + PGA1_c02760 0.80 -3.1
265,325 + PGA1_c02760 0.82 -0.2
265,393 - PGA1_c02760 0.88 -0.2
265,400 + PGA1_c02760 0.89 +1.9
265,400 + PGA1_c02760 0.89 +1.6
265,400 + PGA1_c02760 0.89 +1.1
265,408 - PGA1_c02760 0.90 +0.1
265,408 - PGA1_c02760 0.90 +2.2
265,408 - PGA1_c02760 0.90 -1.8
265,408 - PGA1_c02760 0.90 -0.0
265,408 - PGA1_c02760 0.90 +0.0
265,423 - -1.2
265,520 - -3.1
265,520 - +1.1
265,547 + -2.6
265,557 + -0.5
265,557 + +1.4
265,565 - -0.1

Or see this region's nucleotide sequence