Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4106

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4105 and Dshi_4106 are separated by 226 nucleotidesDshi_4106 and Dshi_4107 are separated by 132 nucleotides Dshi_4105: Dshi_4105 - Resolvase domain (RefSeq), at 34,155 to 35,036 _4105 Dshi_4106: Dshi_4106 - hypothetical protein (RefSeq), at 35,263 to 36,330 _4106 Dshi_4107: Dshi_4107 - hypothetical protein (RefSeq), at 36,463 to 37,227 _4107 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.374 kb on - strand, within Dshi_4105at 34.395 kb on + strand, within Dshi_4105at 34.524 kb on - strand, within Dshi_4105at 34.650 kb on + strand, within Dshi_4105at 35.116 kb on - strandat 35.156 kb on + strandat 35.184 kb on + strandat 35.192 kb on - strandat 35.423 kb on + strand, within Dshi_4106at 35.528 kb on + strand, within Dshi_4106at 35.530 kb on + strand, within Dshi_4106at 35.559 kb on + strand, within Dshi_4106at 35.611 kb on - strand, within Dshi_4106at 35.763 kb on - strand, within Dshi_4106at 35.765 kb on + strand, within Dshi_4106at 35.838 kb on - strand, within Dshi_4106at 36.059 kb on + strand, within Dshi_4106at 36.083 kb on + strand, within Dshi_4106at 36.085 kb on + strand, within Dshi_4106at 36.100 kb on - strand, within Dshi_4106at 36.100 kb on - strand, within Dshi_4106at 36.151 kb on - strand, within Dshi_4106at 36.184 kb on + strand, within Dshi_4106at 36.216 kb on + strand, within Dshi_4106at 36.238 kb on + strandat 36.257 kb on + strandat 36.258 kb on + strandat 36.266 kb on - strandat 36.271 kb on + strandat 36.271 kb on + strandat 36.271 kb on + strandat 36.271 kb on + strandat 36.272 kb on - strandat 36.279 kb on - strandat 36.279 kb on - strandat 36.291 kb on - strandat 36.293 kb on + strandat 36.293 kb on + strandat 36.300 kb on - strandat 36.353 kb on - strandat 36.358 kb on + strandat 36.358 kb on + strandat 36.366 kb on - strandat 36.366 kb on - strandat 36.440 kb on - strandat 36.468 kb on - strandat 36.470 kb on + strandat 36.485 kb on - strandat 36.485 kb on - strandat 36.500 kb on - strandat 36.528 kb on + strandat 36.599 kb on - strand, within Dshi_4107at 36.636 kb on + strand, within Dshi_4107at 36.644 kb on - strand, within Dshi_4107at 36.652 kb on - strand, within Dshi_4107at 36.654 kb on - strand, within Dshi_4107at 36.658 kb on + strand, within Dshi_4107at 36.663 kb on + strand, within Dshi_4107at 36.663 kb on + strand, within Dshi_4107at 36.663 kb on + strand, within Dshi_4107at 36.663 kb on + strand, within Dshi_4107at 36.663 kb on + strand, within Dshi_4107at 36.665 kb on + strand, within Dshi_4107at 36.665 kb on + strand, within Dshi_4107at 36.665 kb on + strand, within Dshi_4107at 36.665 kb on + strand, within Dshi_4107at 36.666 kb on - strand, within Dshi_4107at 36.671 kb on + strand, within Dshi_4107at 36.671 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.673 kb on - strand, within Dshi_4107at 36.681 kb on - strand, within Dshi_4107at 36.689 kb on - strand, within Dshi_4107at 36.699 kb on + strand, within Dshi_4107at 36.713 kb on + strand, within Dshi_4107at 36.725 kb on + strand, within Dshi_4107at 36.733 kb on - strand, within Dshi_4107at 36.797 kb on + strand, within Dshi_4107at 36.797 kb on + strand, within Dshi_4107at 36.810 kb on - strand, within Dshi_4107at 36.826 kb on - strand, within Dshi_4107at 36.831 kb on - strand, within Dshi_4107at 36.836 kb on - strand, within Dshi_4107at 36.843 kb on - strand, within Dshi_4107at 36.844 kb on - strand, within Dshi_4107at 36.849 kb on - strand, within Dshi_4107at 36.884 kb on - strand, within Dshi_4107at 36.903 kb on - strand, within Dshi_4107at 36.903 kb on - strand, within Dshi_4107at 36.903 kb on - strand, within Dshi_4107at 36.924 kb on + strand, within Dshi_4107at 36.932 kb on - strand, within Dshi_4107at 36.932 kb on - strand, within Dshi_4107at 36.932 kb on - strand, within Dshi_4107at 36.945 kb on - strand, within Dshi_4107at 36.947 kb on - strand, within Dshi_4107at 36.962 kb on + strand, within Dshi_4107at 36.972 kb on + strand, within Dshi_4107at 36.989 kb on + strand, within Dshi_4107at 37.004 kb on + strand, within Dshi_4107at 37.018 kb on + strand, within Dshi_4107at 37.026 kb on - strand, within Dshi_4107at 37.037 kb on - strand, within Dshi_4107at 37.039 kb on + strand, within Dshi_4107at 37.039 kb on + strand, within Dshi_4107at 37.039 kb on + strand, within Dshi_4107at 37.039 kb on + strand, within Dshi_4107at 37.039 kb on + strand, within Dshi_4107at 37.047 kb on - strand, within Dshi_4107at 37.047 kb on - strand, within Dshi_4107at 37.108 kb on + strand, within Dshi_4107at 37.153 kb on + strandat 37.153 kb on + strandat 37.190 kb on - strandat 37.230 kb on + strandat 37.230 kb on + strandat 37.235 kb on + strandat 37.245 kb on + strandat 37.245 kb on + strandat 37.284 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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34,374 - Dshi_4105 0.25 +0.6
34,395 + Dshi_4105 0.27 -0.7
34,524 - Dshi_4105 0.42 -1.1
34,650 + Dshi_4105 0.56 -1.1
35,116 - -0.0
35,156 + +0.2
35,184 + -0.9
35,192 - -0.1
35,423 + Dshi_4106 0.15 -0.4
35,528 + Dshi_4106 0.25 -0.9
35,530 + Dshi_4106 0.25 +0.6
35,559 + Dshi_4106 0.28 -0.8
35,611 - Dshi_4106 0.33 -0.3
35,763 - Dshi_4106 0.47 -0.8
35,765 + Dshi_4106 0.47 +0.0
35,838 - Dshi_4106 0.54 -0.5
36,059 + Dshi_4106 0.75 -1.2
36,083 + Dshi_4106 0.77 -0.6
36,085 + Dshi_4106 0.77 -0.9
36,100 - Dshi_4106 0.78 -0.2
36,100 - Dshi_4106 0.78 +0.6
36,151 - Dshi_4106 0.83 +0.1
36,184 + Dshi_4106 0.86 -0.4
36,216 + Dshi_4106 0.89 -1.7
36,238 + +0.0
36,257 + -1.7
36,258 + -0.2
36,266 - +0.3
36,271 + -0.4
36,271 + +0.5
36,271 + -0.4
36,271 + -0.2
36,272 - -0.1
36,279 - +0.7
36,279 - +0.8
36,291 - -0.8
36,293 + -0.3
36,293 + -0.6
36,300 - -0.5
36,353 - -0.4
36,358 + -0.8
36,358 + -0.4
36,366 - +0.4
36,366 - -0.0
36,440 - +0.6
36,468 - -0.9
36,470 + +0.0
36,485 - -0.0
36,485 - +0.3
36,500 - -0.2
36,528 + +0.2
36,599 - Dshi_4107 0.18 +0.6
36,636 + Dshi_4107 0.23 -0.1
36,644 - Dshi_4107 0.24 -1.7
36,652 - Dshi_4107 0.25 +0.3
36,654 - Dshi_4107 0.25 -0.4
36,658 + Dshi_4107 0.25 -1.1
36,663 + Dshi_4107 0.26 +0.3
36,663 + Dshi_4107 0.26 +0.4
36,663 + Dshi_4107 0.26 -2.3
36,663 + Dshi_4107 0.26 -0.5
36,663 + Dshi_4107 0.26 -0.8
36,665 + Dshi_4107 0.26 +0.4
36,665 + Dshi_4107 0.26 +0.2
36,665 + Dshi_4107 0.26 -0.6
36,665 + Dshi_4107 0.26 -0.1
36,666 - Dshi_4107 0.27 -0.5
36,671 + Dshi_4107 0.27 +0.0
36,671 - Dshi_4107 0.27 -0.6
36,673 - Dshi_4107 0.27 +0.2
36,673 - Dshi_4107 0.27 +0.5
36,673 - Dshi_4107 0.27 -0.0
36,673 - Dshi_4107 0.27 -0.0
36,673 - Dshi_4107 0.27 -0.9
36,673 - Dshi_4107 0.27 -0.1
36,681 - Dshi_4107 0.28 -0.3
36,689 - Dshi_4107 0.30 +0.0
36,699 + Dshi_4107 0.31 +0.5
36,713 + Dshi_4107 0.33 -0.7
36,725 + Dshi_4107 0.34 -0.3
36,733 - Dshi_4107 0.35 -0.9
36,797 + Dshi_4107 0.44 -0.1
36,797 + Dshi_4107 0.44 -0.1
36,810 - Dshi_4107 0.45 -1.5
36,826 - Dshi_4107 0.47 -0.5
36,831 - Dshi_4107 0.48 -0.7
36,836 - Dshi_4107 0.49 +0.5
36,843 - Dshi_4107 0.50 +0.5
36,844 - Dshi_4107 0.50 -0.6
36,849 - Dshi_4107 0.50 +0.4
36,884 - Dshi_4107 0.55 +0.1
36,903 - Dshi_4107 0.58 -0.4
36,903 - Dshi_4107 0.58 -0.6
36,903 - Dshi_4107 0.58 +0.5
36,924 + Dshi_4107 0.60 -0.3
36,932 - Dshi_4107 0.61 -0.1
36,932 - Dshi_4107 0.61 +0.1
36,932 - Dshi_4107 0.61 -0.1
36,945 - Dshi_4107 0.63 -1.0
36,947 - Dshi_4107 0.63 +0.6
36,962 + Dshi_4107 0.65 -0.4
36,972 + Dshi_4107 0.67 +0.1
36,989 + Dshi_4107 0.69 +0.4
37,004 + Dshi_4107 0.71 +0.1
37,018 + Dshi_4107 0.73 +0.2
37,026 - Dshi_4107 0.74 -0.1
37,037 - Dshi_4107 0.75 -0.8
37,039 + Dshi_4107 0.75 -1.4
37,039 + Dshi_4107 0.75 +0.3
37,039 + Dshi_4107 0.75 -0.1
37,039 + Dshi_4107 0.75 +0.7
37,039 + Dshi_4107 0.75 -2.0
37,047 - Dshi_4107 0.76 -1.1
37,047 - Dshi_4107 0.76 +0.4
37,108 + Dshi_4107 0.84 +0.1
37,153 + +0.6
37,153 + -0.2
37,190 - -0.5
37,230 + +0.2
37,230 + +0.1
37,235 + +0.2
37,245 + +0.3
37,245 + -0.2
37,284 + -0.1

Or see this region's nucleotide sequence