Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1756

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1753 and Dshi_1754 are separated by 90 nucleotidesDshi_1754 and Dshi_1755 overlap by 8 nucleotidesDshi_1755 and Dshi_1756 overlap by 11 nucleotidesDshi_1756 and Dshi_1757 overlap by 10 nucleotidesDshi_1757 and Dshi_1758 are separated by 109 nucleotides Dshi_1753: Dshi_1753 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,819,173 to 1,819,949 _1753 Dshi_1754: Dshi_1754 - hypothetical protein (RefSeq), at 1,820,040 to 1,820,456 _1754 Dshi_1755: Dshi_1755 - hypothetical protein (RefSeq), at 1,820,449 to 1,820,655 _1755 Dshi_1756: Dshi_1756 - hypothetical protein (RefSeq), at 1,820,645 to 1,821,166 _1756 Dshi_1757: Dshi_1757 - protein of unknown function DUF847 (RefSeq), at 1,821,157 to 1,821,768 _1757 Dshi_1758: Dshi_1758 - CcmE/CycJ protein (RefSeq), at 1,821,878 to 1,822,360 _1758 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1at 1819.656 kb on + strand, within Dshi_1753at 1819.766 kb on - strand, within Dshi_1753at 1819.811 kb on - strand, within Dshi_1753at 1819.936 kb on - strandat 1819.945 kb on + strandat 1819.953 kb on - strandat 1820.011 kb on - strandat 1820.188 kb on + strand, within Dshi_1754at 1820.196 kb on - strand, within Dshi_1754at 1820.202 kb on - strand, within Dshi_1754at 1820.238 kb on - strand, within Dshi_1754at 1820.366 kb on - strand, within Dshi_1754at 1820.412 kb on + strand, within Dshi_1754at 1820.420 kb on - strandat 1820.482 kb on + strand, within Dshi_1755at 1820.515 kb on + strand, within Dshi_1755at 1820.549 kb on - strand, within Dshi_1755at 1820.892 kb on - strand, within Dshi_1756at 1820.903 kb on + strand, within Dshi_1756at 1820.970 kb on - strand, within Dshi_1756at 1821.036 kb on - strand, within Dshi_1756at 1821.102 kb on - strand, within Dshi_1756at 1821.105 kb on + strand, within Dshi_1756at 1821.215 kb on + strandat 1821.352 kb on - strand, within Dshi_1757at 1821.417 kb on + strand, within Dshi_1757at 1821.512 kb on - strand, within Dshi_1757at 1821.519 kb on + strand, within Dshi_1757at 1821.539 kb on - strand, within Dshi_1757at 1821.759 kb on - strandat 1821.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,819,656 + Dshi_1753 0.62 -0.4
1,819,766 - Dshi_1753 0.76 -0.9
1,819,811 - Dshi_1753 0.82 +1.0
1,819,936 - -0.3
1,819,945 + +0.3
1,819,953 - -0.3
1,820,011 - +0.1
1,820,188 + Dshi_1754 0.35 +0.0
1,820,196 - Dshi_1754 0.37 -0.7
1,820,202 - Dshi_1754 0.39 +0.1
1,820,238 - Dshi_1754 0.47 -0.2
1,820,366 - Dshi_1754 0.78 -0.1
1,820,412 + Dshi_1754 0.89 +0.4
1,820,420 - -0.5
1,820,482 + Dshi_1755 0.16 +0.1
1,820,515 + Dshi_1755 0.32 -0.3
1,820,549 - Dshi_1755 0.48 +0.6
1,820,892 - Dshi_1756 0.47 +0.7
1,820,903 + Dshi_1756 0.49 -0.4
1,820,970 - Dshi_1756 0.62 +0.3
1,821,036 - Dshi_1756 0.75 +1.3
1,821,102 - Dshi_1756 0.88 -0.4
1,821,105 + Dshi_1756 0.88 +0.4
1,821,215 + +0.2
1,821,352 - Dshi_1757 0.32 -2.3
1,821,417 + Dshi_1757 0.42 +0.6
1,821,512 - Dshi_1757 0.58 -0.6
1,821,519 + Dshi_1757 0.59 -0.3
1,821,539 - Dshi_1757 0.62 +0.4
1,821,759 - -0.6
1,821,785 - +1.4

Or see this region's nucleotide sequence