Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0424

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0423 and Dshi_0424 are separated by 616 nucleotidesDshi_0424 and Dshi_0426 are separated by 921 nucleotides Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488 _0423 Dshi_0424: Dshi_0424 - peptidase M41 (RefSeq), at 417,105 to 417,566 _0424 Dshi_0426: Dshi_0426 - hypothetical protein (RefSeq), at 418,488 to 418,850 _0426 Position (kb) 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 416.123 kb on - strand, within Dshi_0423at 416.219 kb on + strand, within Dshi_0423at 416.273 kb on - strand, within Dshi_0423at 416.297 kb on - strand, within Dshi_0423at 416.309 kb on + strand, within Dshi_0423at 416.317 kb on - strand, within Dshi_0423at 416.405 kb on - strand, within Dshi_0423at 416.425 kb on + strandat 416.427 kb on + strandat 416.433 kb on + strandat 416.505 kb on - strandat 416.512 kb on - strandat 416.530 kb on - strandat 416.557 kb on + strandat 416.562 kb on + strandat 416.565 kb on - strandat 416.629 kb on + strandat 416.631 kb on + strandat 416.668 kb on + strandat 416.675 kb on + strandat 416.676 kb on - strandat 416.701 kb on + strandat 416.785 kb on + strandat 416.786 kb on - strandat 416.832 kb on + strandat 416.843 kb on + strandat 416.851 kb on - strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.853 kb on + strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.861 kb on - strandat 416.880 kb on - strandat 416.882 kb on + strandat 416.922 kb on - strandat 417.005 kb on - strandat 417.012 kb on - strandat 417.014 kb on + strandat 417.027 kb on + strandat 417.037 kb on + strandat 417.045 kb on - strandat 417.045 kb on - strandat 417.052 kb on - strandat 417.059 kb on + strandat 417.128 kb on + strandat 417.183 kb on + strand, within Dshi_0424at 417.191 kb on - strand, within Dshi_0424at 417.197 kb on + strand, within Dshi_0424at 417.212 kb on + strand, within Dshi_0424at 417.237 kb on + strand, within Dshi_0424at 417.239 kb on + strand, within Dshi_0424at 417.251 kb on - strand, within Dshi_0424at 417.267 kb on + strand, within Dshi_0424at 417.313 kb on + strand, within Dshi_0424at 417.346 kb on - strand, within Dshi_0424at 417.348 kb on - strand, within Dshi_0424at 417.441 kb on + strand, within Dshi_0424at 417.441 kb on - strand, within Dshi_0424at 417.474 kb on + strand, within Dshi_0424at 417.480 kb on + strand, within Dshi_0424at 417.572 kb on + strandat 417.572 kb on + strandat 417.578 kb on - strandat 417.580 kb on - strandat 417.632 kb on - strandat 417.701 kb on - strandat 417.816 kb on + strandat 417.824 kb on - strandat 417.829 kb on + strandat 417.837 kb on - strandat 417.856 kb on - strandat 417.864 kb on - strandat 417.936 kb on + strandat 417.958 kb on + strandat 418.075 kb on + strandat 418.083 kb on - strandat 418.090 kb on - strandat 418.103 kb on - strandat 418.139 kb on + strandat 418.158 kb on - strandat 418.225 kb on - strandat 418.263 kb on + strandat 418.377 kb on + strandat 418.450 kb on - strandat 418.533 kb on - strand, within Dshi_0426at 418.562 kb on + strand, within Dshi_0426at 418.563 kb on + strand, within Dshi_0426

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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416,123 - Dshi_0423 0.50 -0.5
416,219 + Dshi_0423 0.63 +0.6
416,273 - Dshi_0423 0.70 -0.1
416,297 - Dshi_0423 0.74 +0.0
416,309 + Dshi_0423 0.75 -1.3
416,317 - Dshi_0423 0.76 -0.9
416,405 - Dshi_0423 0.88 -0.3
416,425 + -0.6
416,427 + +0.3
416,433 + +0.4
416,505 - -0.5
416,512 - -0.1
416,530 - -0.6
416,557 + -0.9
416,562 + -0.4
416,565 - +0.1
416,629 + -0.4
416,631 + -1.5
416,668 + +0.3
416,675 + -0.1
416,676 - +0.5
416,701 + -0.2
416,785 + +0.1
416,786 - +0.2
416,832 + -2.1
416,843 + -0.0
416,851 - -0.8
416,853 + -0.7
416,853 + +0.0
416,853 + -0.6
416,861 - -1.1
416,861 - -1.1
416,861 - -0.4
416,880 - +0.6
416,882 + +0.9
416,922 - -0.6
417,005 - -0.3
417,012 - -0.0
417,014 + -0.3
417,027 + -0.2
417,037 + -0.9
417,045 - +0.3
417,045 - +0.7
417,052 - -0.1
417,059 + -1.3
417,128 + +0.3
417,183 + Dshi_0424 0.17 -0.4
417,191 - Dshi_0424 0.19 +0.1
417,197 + Dshi_0424 0.20 -0.2
417,212 + Dshi_0424 0.23 -0.8
417,237 + Dshi_0424 0.29 -0.6
417,239 + Dshi_0424 0.29 +0.2
417,251 - Dshi_0424 0.32 -0.3
417,267 + Dshi_0424 0.35 -0.8
417,313 + Dshi_0424 0.45 +0.1
417,346 - Dshi_0424 0.52 -0.5
417,348 - Dshi_0424 0.53 +0.2
417,441 + Dshi_0424 0.73 -0.2
417,441 - Dshi_0424 0.73 -2.1
417,474 + Dshi_0424 0.80 -1.3
417,480 + Dshi_0424 0.81 -0.2
417,572 + +2.2
417,572 + +0.1
417,578 - +0.2
417,580 - +0.0
417,632 - +0.1
417,701 - -0.5
417,816 + -0.5
417,824 - -0.1
417,829 + +0.1
417,837 - -0.6
417,856 - -0.6
417,864 - -0.2
417,936 + +0.2
417,958 + -0.4
418,075 + -0.4
418,083 - -0.9
418,090 - +0.0
418,103 - +0.5
418,139 + +0.6
418,158 - -0.2
418,225 - +1.5
418,263 + -0.4
418,377 + -0.2
418,450 - +0.1
418,533 - Dshi_0426 0.12 -0.3
418,562 + Dshi_0426 0.20 +0.3
418,563 + Dshi_0426 0.21 +0.6

Or see this region's nucleotide sequence