Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3091 and HP15_3092 are separated by 495 nucleotides HP15_3092 and HP15_3093 overlap by 32 nucleotides HP15_3093 and HP15_3094 overlap by 4 nucleotides
HP15_3091: HP15_3091 - acyltransferase, WS/DGAT/MGAT, at 3,245,759 to 3,247,126
_3091
HP15_3092: HP15_3092 - conserved hypothetical protein, at 3,247,622 to 3,248,755
_3092
HP15_3093: HP15_3093 - phage integrase family protein, at 3,248,724 to 3,249,707
_3093
HP15_3094: HP15_3094 - hypothetical protein, at 3,249,704 to 3,250,969
_3094
Position (kb)
3247
3248
3249 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3246.629 kb on - strand, within HP15_3091 at 3246.629 kb on - strand, within HP15_3091 at 3246.673 kb on - strand, within HP15_3091 at 3246.716 kb on - strand, within HP15_3091 at 3246.757 kb on + strand, within HP15_3091 at 3246.768 kb on + strand, within HP15_3091 at 3246.776 kb on - strand, within HP15_3091 at 3246.922 kb on + strand, within HP15_3091 at 3247.014 kb on - strand at 3247.075 kb on - strand at 3247.075 kb on - strand at 3247.075 kb on - strand at 3247.128 kb on + strand at 3247.729 kb on - strand at 3247.732 kb on - strand at 3247.739 kb on - strand, within HP15_3092 at 3247.744 kb on - strand, within HP15_3092 at 3247.764 kb on + strand, within HP15_3092 at 3247.777 kb on + strand, within HP15_3092 at 3247.804 kb on - strand, within HP15_3092 at 3247.841 kb on - strand, within HP15_3092 at 3247.849 kb on - strand, within HP15_3092 at 3248.051 kb on - strand, within HP15_3092 at 3248.070 kb on + strand, within HP15_3092 at 3248.083 kb on - strand, within HP15_3092 at 3248.153 kb on + strand, within HP15_3092 at 3248.347 kb on + strand, within HP15_3092 at 3248.347 kb on - strand, within HP15_3092 at 3248.366 kb on + strand, within HP15_3092 at 3248.420 kb on - strand, within HP15_3092 at 3248.735 kb on + strand at 3248.757 kb on - strand at 3248.902 kb on + strand, within HP15_3093 at 3248.909 kb on + strand, within HP15_3093 at 3249.003 kb on - strand, within HP15_3093 at 3249.005 kb on + strand, within HP15_3093 at 3249.033 kb on - strand, within HP15_3093 at 3249.033 kb on - strand, within HP15_3093 at 3249.094 kb on + strand, within HP15_3093 at 3249.112 kb on - strand, within HP15_3093 at 3249.127 kb on + strand, within HP15_3093 at 3249.160 kb on - strand, within HP15_3093 at 3249.214 kb on + strand, within HP15_3093 at 3249.247 kb on + strand, within HP15_3093 at 3249.314 kb on + strand, within HP15_3093 at 3249.558 kb on - strand, within HP15_3093
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,246,629 - HP15_3091 0.64 -0.6 3,246,629 - HP15_3091 0.64 +0.2 3,246,673 - HP15_3091 0.67 -1.0 3,246,716 - HP15_3091 0.70 -0.1 3,246,757 + HP15_3091 0.73 +0.6 3,246,768 + HP15_3091 0.74 +0.2 3,246,776 - HP15_3091 0.74 +0.6 3,246,922 + HP15_3091 0.85 +0.2 3,247,014 - +0.7 3,247,075 - +0.8 3,247,075 - +0.3 3,247,075 - -0.5 3,247,128 + -0.4 3,247,729 - +0.3 3,247,732 - +2.2 3,247,739 - HP15_3092 0.10 +0.0 3,247,744 - HP15_3092 0.11 +2.6 3,247,764 + HP15_3092 0.13 +0.3 3,247,777 + HP15_3092 0.14 -1.1 3,247,804 - HP15_3092 0.16 +3.0 3,247,841 - HP15_3092 0.19 +2.0 3,247,849 - HP15_3092 0.20 +1.0 3,248,051 - HP15_3092 0.38 +0.1 3,248,070 + HP15_3092 0.40 +0.4 3,248,083 - HP15_3092 0.41 +0.7 3,248,153 + HP15_3092 0.47 -0.5 3,248,347 + HP15_3092 0.64 -0.5 3,248,347 - HP15_3092 0.64 +0.3 3,248,366 + HP15_3092 0.66 +1.6 3,248,420 - HP15_3092 0.70 +1.0 3,248,735 + +0.5 3,248,757 - +0.9 3,248,902 + HP15_3093 0.18 +0.4 3,248,909 + HP15_3093 0.19 +0.4 3,249,003 - HP15_3093 0.28 +0.5 3,249,005 + HP15_3093 0.29 +0.0 3,249,033 - HP15_3093 0.31 +0.7 3,249,033 - HP15_3093 0.31 +0.4 3,249,094 + HP15_3093 0.38 +0.0 3,249,112 - HP15_3093 0.39 -0.3 3,249,127 + HP15_3093 0.41 +0.3 3,249,160 - HP15_3093 0.44 -1.0 3,249,214 + HP15_3093 0.50 -0.4 3,249,247 + HP15_3093 0.53 -0.4 3,249,314 + HP15_3093 0.60 -0.1 3,249,558 - HP15_3093 0.85 -0.1
Or see this region's nucleotide sequence