Strain Fitness in Marinobacter adhaerens HP15 around HP15_2559

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2557 and HP15_2558 overlap by 23 nucleotidesHP15_2558 and HP15_2559 are separated by 13 nucleotidesHP15_2559 and HP15_2560 are separated by 171 nucleotides HP15_2557: HP15_2557 - alpha/beta hydrolase fold-3 domain protein, at 2,703,784 to 2,704,677 _2557 HP15_2558: HP15_2558 - putative nuclease, at 2,704,655 to 2,704,909 _2558 HP15_2559: HP15_2559 - membrane protein containing DUF6, transmembrane, at 2,704,923 to 2,705,828 _2559 HP15_2560: HP15_2560 - TRAP dicarboxylate transporter- DctP subunit, at 2,706,000 to 2,707,103 _2560 Position (kb) 2704 2705 2706Strain fitness (log2 ratio) -1 0 1 2 3 4at 2703.923 kb on - strand, within HP15_2557at 2704.021 kb on + strand, within HP15_2557at 2704.050 kb on - strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.313 kb on + strand, within HP15_2557at 2704.321 kb on - strand, within HP15_2557at 2704.321 kb on - strand, within HP15_2557at 2704.462 kb on + strand, within HP15_2557at 2704.472 kb on + strand, within HP15_2557at 2704.484 kb on - strand, within HP15_2557at 2704.560 kb on + strand, within HP15_2557at 2704.567 kb on + strand, within HP15_2557at 2704.691 kb on - strand, within HP15_2558at 2704.691 kb on - strand, within HP15_2558at 2704.701 kb on + strand, within HP15_2558at 2704.939 kb on - strandat 2705.024 kb on - strand, within HP15_2559at 2705.029 kb on - strand, within HP15_2559at 2705.034 kb on - strand, within HP15_2559at 2705.086 kb on + strand, within HP15_2559at 2705.162 kb on + strand, within HP15_2559at 2705.306 kb on + strand, within HP15_2559at 2705.323 kb on + strand, within HP15_2559at 2705.351 kb on + strand, within HP15_2559at 2705.390 kb on - strand, within HP15_2559at 2705.430 kb on + strand, within HP15_2559at 2705.493 kb on + strand, within HP15_2559at 2705.512 kb on + strand, within HP15_2559at 2705.587 kb on + strand, within HP15_2559at 2705.668 kb on - strand, within HP15_2559at 2705.778 kb on + strandat 2705.786 kb on - strandat 2705.931 kb on - strandat 2706.059 kb on - strandat 2706.085 kb on - strandat 2706.127 kb on + strand, within HP15_2560at 2706.306 kb on + strand, within HP15_2560at 2706.379 kb on - strand, within HP15_2560at 2706.419 kb on - strand, within HP15_2560at 2706.421 kb on + strand, within HP15_2560at 2706.429 kb on - strand, within HP15_2560at 2706.502 kb on - strand, within HP15_2560at 2706.564 kb on + strand, within HP15_2560at 2706.592 kb on + strand, within HP15_2560at 2706.607 kb on + strand, within HP15_2560at 2706.646 kb on - strand, within HP15_2560at 2706.667 kb on - strand, within HP15_2560at 2706.720 kb on + strand, within HP15_2560at 2706.728 kb on - strand, within HP15_2560at 2706.728 kb on - strand, within HP15_2560at 2706.738 kb on - strand, within HP15_2560

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,703,923 - HP15_2557 0.16 +0.2
2,704,021 + HP15_2557 0.27 +0.3
2,704,050 - HP15_2557 0.30 +3.8
2,704,313 + HP15_2557 0.59 -0.4
2,704,313 + HP15_2557 0.59 -0.4
2,704,313 + HP15_2557 0.59 +1.6
2,704,321 - HP15_2557 0.60 -0.8
2,704,321 - HP15_2557 0.60 -0.6
2,704,462 + HP15_2557 0.76 +2.0
2,704,472 + HP15_2557 0.77 -1.0
2,704,484 - HP15_2557 0.78 -0.5
2,704,560 + HP15_2557 0.87 -0.4
2,704,567 + HP15_2557 0.88 -0.7
2,704,691 - HP15_2558 0.14 -0.5
2,704,691 - HP15_2558 0.14 +0.5
2,704,701 + HP15_2558 0.18 -0.7
2,704,939 - -0.0
2,705,024 - HP15_2559 0.11 +0.6
2,705,029 - HP15_2559 0.12 +0.4
2,705,034 - HP15_2559 0.12 -0.3
2,705,086 + HP15_2559 0.18 -0.5
2,705,162 + HP15_2559 0.26 +0.6
2,705,306 + HP15_2559 0.42 +1.3
2,705,323 + HP15_2559 0.44 +1.0
2,705,351 + HP15_2559 0.47 -0.4
2,705,390 - HP15_2559 0.52 +0.5
2,705,430 + HP15_2559 0.56 -0.7
2,705,493 + HP15_2559 0.63 +0.4
2,705,512 + HP15_2559 0.65 +0.7
2,705,587 + HP15_2559 0.73 +0.5
2,705,668 - HP15_2559 0.82 -0.0
2,705,778 + +0.2
2,705,786 - -0.7
2,705,931 - +0.7
2,706,059 - -0.7
2,706,085 - -1.3
2,706,127 + HP15_2560 0.12 -0.6
2,706,306 + HP15_2560 0.28 +0.9
2,706,379 - HP15_2560 0.34 +0.1
2,706,419 - HP15_2560 0.38 -0.0
2,706,421 + HP15_2560 0.38 -0.7
2,706,429 - HP15_2560 0.39 -0.1
2,706,502 - HP15_2560 0.45 -0.4
2,706,564 + HP15_2560 0.51 +0.4
2,706,592 + HP15_2560 0.54 -0.6
2,706,607 + HP15_2560 0.55 +0.2
2,706,646 - HP15_2560 0.59 -0.0
2,706,667 - HP15_2560 0.60 -0.7
2,706,720 + HP15_2560 0.65 +0.5
2,706,728 - HP15_2560 0.66 -1.3
2,706,728 - HP15_2560 0.66 -0.9
2,706,738 - HP15_2560 0.67 -0.1

Or see this region's nucleotide sequence