Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1512

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1511 and Dshi_1512 overlap by 4 nucleotidesDshi_1512 and Dshi_1513 are separated by 52 nucleotidesDshi_1513 and Dshi_1514 are separated by 79 nucleotides Dshi_1511: Dshi_1511 - Carboxypeptidase Taq (RefSeq), at 1,573,442 to 1,574,914 _1511 Dshi_1512: Dshi_1512 - cytochrome oxidase assembly (RefSeq), at 1,574,911 to 1,576,062 _1512 Dshi_1513: Dshi_1513 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,576,115 to 1,576,882 _1513 Dshi_1514: Dshi_1514 - thiamine monophosphate synthase (RefSeq), at 1,576,962 to 1,577,585 _1514 Position (kb) 1574 1575 1576 1577Strain fitness (log2 ratio) -1 0 1at 1574.107 kb on - strand, within Dshi_1511at 1574.457 kb on + strand, within Dshi_1511at 1574.652 kb on - strand, within Dshi_1511at 1574.777 kb on - strandat 1574.868 kb on + strandat 1576.096 kb on - strandat 1576.316 kb on - strand, within Dshi_1513at 1576.406 kb on - strand, within Dshi_1513at 1576.885 kb on + strandat 1576.885 kb on + strandat 1576.885 kb on + strandat 1576.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,574,107 - Dshi_1511 0.45 -0.5
1,574,457 + Dshi_1511 0.69 +0.1
1,574,652 - Dshi_1511 0.82 +0.1
1,574,777 - -0.4
1,574,868 + +0.4
1,576,096 - -1.3
1,576,316 - Dshi_1513 0.26 +0.9
1,576,406 - Dshi_1513 0.38 +0.8
1,576,885 + -0.1
1,576,885 + -0.5
1,576,885 + +0.1
1,576,893 - +1.3

Or see this region's nucleotide sequence