Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0911 and Dshi_0912 overlap by 4 nucleotides Dshi_0912 and Dshi_0913 are separated by 3 nucleotides Dshi_0913 and Dshi_0914 overlap by 17 nucleotides Dshi_0914 and Dshi_0915 overlap by 4 nucleotides
Dshi_0911: Dshi_0911 - Thiamine-phosphate diphosphorylase (RefSeq), at 934,241 to 934,840
_0911
Dshi_0912: Dshi_0912 - thiazole biosynthesis family protein (RefSeq), at 934,837 to 935,631
_0912
Dshi_0913: Dshi_0913 - thiamine biosynthesis protein ThiS (RefSeq), at 935,635 to 935,829
_0913
Dshi_0914: Dshi_0914 - glycine oxidase ThiO (RefSeq), at 935,813 to 936,790
_0914
Dshi_0915: Dshi_0915 - phosphomethylpyrimidine kinase (RefSeq), at 936,787 to 937,584
_0915
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 935.087 kb on - strand, within Dshi_0912 at 935.127 kb on + strand, within Dshi_0912 at 935.169 kb on - strand, within Dshi_0912 at 935.274 kb on + strand, within Dshi_0912 at 935.376 kb on - strand, within Dshi_0912 at 935.457 kb on - strand, within Dshi_0912 at 935.621 kb on + strand at 935.621 kb on + strand at 935.694 kb on - strand, within Dshi_0913 at 935.884 kb on + strand at 936.063 kb on - strand, within Dshi_0914 at 936.195 kb on - strand, within Dshi_0914 at 936.394 kb on - strand, within Dshi_0914 at 936.573 kb on + strand, within Dshi_0914 at 936.607 kb on - strand, within Dshi_0914 at 936.668 kb on + strand, within Dshi_0914 at 936.885 kb on - strand, within Dshi_0915 at 936.914 kb on + strand, within Dshi_0915 at 937.069 kb on + strand, within Dshi_0915 at 937.166 kb on + strand, within Dshi_0915 at 937.176 kb on + strand, within Dshi_0915 at 937.209 kb on - strand, within Dshi_0915 at 937.335 kb on + strand, within Dshi_0915 at 937.348 kb on - strand, within Dshi_0915 at 937.477 kb on + strand, within Dshi_0915 at 937.621 kb on - strand at 937.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 935,087 - Dshi_0912 0.31 +0.1 935,127 + Dshi_0912 0.36 +0.5 935,169 - Dshi_0912 0.42 -0.0 935,274 + Dshi_0912 0.55 -1.6 935,376 - Dshi_0912 0.68 -1.0 935,457 - Dshi_0912 0.78 -2.0 935,621 + +0.3 935,621 + +0.4 935,694 - Dshi_0913 0.30 -0.4 935,884 + +0.1 936,063 - Dshi_0914 0.26 -1.3 936,195 - Dshi_0914 0.39 -2.2 936,394 - Dshi_0914 0.59 -1.8 936,573 + Dshi_0914 0.78 -0.4 936,607 - Dshi_0914 0.81 -0.1 936,668 + Dshi_0914 0.87 -1.2 936,885 - Dshi_0915 0.12 -1.2 936,914 + Dshi_0915 0.16 -1.1 937,069 + Dshi_0915 0.35 -1.8 937,166 + Dshi_0915 0.47 +0.9 937,176 + Dshi_0915 0.49 -1.2 937,209 - Dshi_0915 0.53 -3.0 937,335 + Dshi_0915 0.69 -1.8 937,348 - Dshi_0915 0.70 -1.7 937,477 + Dshi_0915 0.86 -0.1 937,621 - -0.4 937,785 - -0.8
Or see this region's nucleotide sequence