Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0410 and Dshi_0411 overlap by 17 nucleotides Dshi_0411 and Dshi_0412 are separated by 231 nucleotides
Dshi_0410: Dshi_0410 - hypothetical protein (RefSeq), at 404,246 to 405,190
_0410
Dshi_0411: Dshi_0411 - hypothetical protein (RefSeq), at 405,174 to 406,022
_0411
Dshi_0412: Dshi_0412 - beta-Ig-H3/fasciclin (RefSeq), at 406,254 to 407,786
_0412
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 404.244 kb on + strand at 404.252 kb on + strand at 404.252 kb on + strand at 404.252 kb on - strand at 404.260 kb on - strand at 404.311 kb on - strand at 404.337 kb on - strand at 404.413 kb on + strand, within Dshi_0410 at 404.525 kb on - strand, within Dshi_0410 at 404.709 kb on + strand, within Dshi_0410 at 404.743 kb on + strand, within Dshi_0410 at 404.789 kb on - strand, within Dshi_0410 at 404.807 kb on + strand, within Dshi_0410 at 404.959 kb on - strand, within Dshi_0410 at 405.043 kb on + strand, within Dshi_0410 at 405.206 kb on + strand at 405.322 kb on + strand, within Dshi_0411 at 405.332 kb on + strand, within Dshi_0411 at 405.335 kb on + strand, within Dshi_0411 at 405.404 kb on - strand, within Dshi_0411 at 405.675 kb on - strand, within Dshi_0411 at 405.675 kb on - strand, within Dshi_0411 at 405.785 kb on - strand, within Dshi_0411 at 405.816 kb on + strand, within Dshi_0411 at 405.823 kb on + strand, within Dshi_0411 at 405.865 kb on + strand, within Dshi_0411 at 405.941 kb on + strand at 405.949 kb on - strand at 405.949 kb on - strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.145 kb on + strand at 406.146 kb on + strand at 406.160 kb on - strand at 406.176 kb on - strand at 406.180 kb on + strand at 406.241 kb on + strand at 406.325 kb on + strand at 406.369 kb on + strand at 406.407 kb on + strand at 406.415 kb on - strand, within Dshi_0412 at 406.479 kb on + strand, within Dshi_0412 at 406.497 kb on - strand, within Dshi_0412 at 406.524 kb on + strand, within Dshi_0412 at 406.528 kb on + strand, within Dshi_0412 at 406.660 kb on + strand, within Dshi_0412 at 406.727 kb on - strand, within Dshi_0412 at 406.866 kb on + strand, within Dshi_0412 at 406.881 kb on - strand, within Dshi_0412 at 406.891 kb on - strand, within Dshi_0412 at 406.912 kb on + strand, within Dshi_0412 at 406.959 kb on - strand at 406.995 kb on + strand, within Dshi_0412 at 407.003 kb on - strand, within Dshi_0412 at 407.016 kb on + strand, within Dshi_0412 at 407.016 kb on + strand, within Dshi_0412 at 407.017 kb on + strand, within Dshi_0412
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 404,244 + +0.2 404,252 + +0.6 404,252 + -1.8 404,252 - +0.0 404,260 - +0.6 404,311 - -0.3 404,337 - -0.5 404,413 + Dshi_0410 0.18 -0.2 404,525 - Dshi_0410 0.30 +1.0 404,709 + Dshi_0410 0.49 -0.1 404,743 + Dshi_0410 0.53 -0.4 404,789 - Dshi_0410 0.57 -0.4 404,807 + Dshi_0410 0.59 +0.6 404,959 - Dshi_0410 0.75 +0.3 405,043 + Dshi_0410 0.84 -2.9 405,206 + -0.4 405,322 + Dshi_0411 0.17 -1.8 405,332 + Dshi_0411 0.19 -0.1 405,335 + Dshi_0411 0.19 +0.9 405,404 - Dshi_0411 0.27 -0.6 405,675 - Dshi_0411 0.59 -0.9 405,675 - Dshi_0411 0.59 -1.6 405,785 - Dshi_0411 0.72 -0.5 405,816 + Dshi_0411 0.76 -0.8 405,823 + Dshi_0411 0.76 -0.4 405,865 + Dshi_0411 0.81 -0.8 405,941 + +0.2 405,949 - +0.4 405,949 - -0.9 406,011 + -0.7 406,011 + -0.1 406,145 + -0.8 406,146 + -0.2 406,160 - +0.0 406,176 - -0.1 406,180 + -1.8 406,241 + +0.1 406,325 + +0.4 406,369 + -0.5 406,407 + +0.1 406,415 - Dshi_0412 0.11 -0.7 406,479 + Dshi_0412 0.15 -0.2 406,497 - Dshi_0412 0.16 +1.0 406,524 + Dshi_0412 0.18 +1.7 406,528 + Dshi_0412 0.18 -0.4 406,660 + Dshi_0412 0.26 +0.0 406,727 - Dshi_0412 0.31 +0.1 406,866 + Dshi_0412 0.40 +0.1 406,881 - Dshi_0412 0.41 -0.1 406,891 - Dshi_0412 0.42 -0.1 406,912 + Dshi_0412 0.43 -0.6 406,959 - -0.6 406,995 + Dshi_0412 0.48 -0.5 407,003 - Dshi_0412 0.49 -0.1 407,016 + Dshi_0412 0.50 -1.3 407,016 + Dshi_0412 0.50 +0.2 407,017 + Dshi_0412 0.50 +0.8
Or see this region's nucleotide sequence